Bordetella bronchiseptica 253: BN112_3397
Help
Entry
BN112_3397 CDS
T02344
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbh
Bordetella bronchiseptica 253
Pathway
bbh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN112_3397 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbh03021
]
BN112_3397 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbh03400
]
BN112_3397 (rpoC)
Enzymes [BR:
bbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN112_3397 (rpoC)
Transcription machinery [BR:
bbh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN112_3397 (rpoC)
DNA repair and recombination proteins [BR:
bbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN112_3397 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CCJ55311
UniProt:
A0A0C6PAD9
LinkDB
All DBs
Position
complement(3659466..3663710)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNILFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFADVSEVQRAYDNG
EVELQTRITVRLTEYERDEQGEWQPVKHRHETTVGRALLSEILPKGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMEDMLIPKAKEGILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVVNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTSHGYAMKALVEGGEVIEPLRDRIL
GRVAAIDVVNPDTQETAIAAGTLLDEDLVDLIDRLGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGSHVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSNGTVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLVGDGEAVKAGTRLAS
WDPLTRPIVSEYSGAVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNENGEDVKIAGTDHSVNISFPVGALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDPGDTEFIPGEQVERSELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAERE
AARQLANPFEDAPVTVGGEPEAPAADTPSDDSAE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgacctcttcaagcaagtctcgcaagacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaagatccgttcgtggtctttcggcgaagttcgcaag
cccgagacgatcaactaccgtacgttcaagcccgagcgtgacggcctgttctgcgccaag
atcttcggtcccatcaaggactacgaatgcttgtgcggcaagtacaagcgcctgaagcat
cgtggcgtgatctgcgaaaagtgcggcgtggaagtcaccgtcgccaaggtgcgccgcgag
cgcatgggccatatcgaactggccagcccggttgcgcacatctggttcctcaagagcctg
ccgtcgcgcctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctggtgcgtgatcgagcccggcatgacgccgctcaaacgcggccagatcatg
tccgatgacgacttcctggccaagaccgaagagtacggcgacgacttccgtgccctgatg
ggcgccgaggccgtgcgcgaactgctgcgcaccatcgacatcgatcgcgaagtcgagacg
ctgcgcggcgagctcaaggccaccagctcggaagccaagatcaagaagatctccaagcgc
ctgaaggtgctggaaggcttccagaagtccggcatcaaggccgaatggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaag
cgcctgctcgaactgaaggcgcccgagatcattctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggccatgaccggcgccaac
aagcgccagctcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccgttc
atcttcaatcgcctggagatgatgggcctggccacgaccatcaaggctgccaagaagctg
gtcgagagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtcatgctcaaccgtgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgccgccttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgctcgaagcgcagctcgaagcg
cgtacgctgatgctggcctcgaacaacatattgttcccggctaacggcgagccgtccatc
gtgccgtcgcaggatatcgtgctgggcctgtactacacgacccgcgaacgcatcaacggc
aagggcgaaggcattttctttgccgacgtgtcggaagtgcagcgcgcttatgacaacggc
gaagtcgaactgcagacccgcatcaccgtacgcctgaccgagtacgagcgcgacgagcag
ggcgagtggcagccggtcaagcaccgccatgaaacgacggtcggccgtgcgctgctgtcc
gagatcctgcccaagggcctgcccttcacggtgctgaacaaggccctgaagaagaaagag
atctcgcgcctgatcaaccagtcgttccgccgttgcggcctgcgcgacacggtgattttt
gccgacaagctgatgcagtcgggcttccgcctggccacgcgcggcggcatctcgatcgcc
atggaagacatgctgatcccgaaggccaaggaaggcatcctggccgaggccagccgcgag
gtcaaggaaatcgacaagcagtactcgtcgggtctggtgacctcgcaagagcgctacaac
aacgtggtcgatatctggggcaaggccggcgacaaggtcggcaaggcgatgatggagcaa
ctggccaccgagccggtcgtcaaccgtcatggcgaggaagtgcgccaggaatcgttcaac
tcgatctacatgatggccgactcgggcgcccgtggttcggccgcccagattcgccagctg
gccggcatgcgcggcctgatggccaagccggacggctcgatcatcgagaccccgattacc
gccaacttccgcgaaggcctgaacgtactgcagtacttcatctcgacgcacggcgcgcgc
aagggcttggccgataccgcgctgaagaccgcgaactcgggctacctgacgcgccgcctg
gtcgacgtgacccaggatctggtgatcaccgaagacgattgcggcaccagccatggctac
gcgatgaaggccctggtcgagggcggtgaagtcatcgaaccgctgcgcgaccgtattctc
ggccgcgtggccgcgatcgacgtcgtcaaccccgacacgcaggaaacggccatcgcggct
ggcaccctgctcgacgaagacctggtcgacctgatcgaccgcctgggcgtggacgaagtc
aaggtccgcacgccgctgacgtgcgaaacgcgtcacggcctgtgcgcgcattgctatggc
cgcgatctgggccgcggttcgcacgtcaacgtgggcgaggccgtcggcgtcatcgccgcg
caatcgatcggcgaaccgggcacgcagctcaccatgcggacgttccacatcggtggcgcc
gcctcgcgttcggccctggccagcgccgtggaaaccaagtccaacggcacggtcggcttt
gccagcacgatgcgctatgtcaccaacgccaagggcgagcgtgtggcgatttcgcgttcc
ggcgaactggccatcttcgacgacaacggccgcgagcgcgagcgccacaagatcccttat
ggcgccaccgtcctggttggcgacggcgaagcggtcaaggccggcacccgtctggccagc
tgggatccgctgacccgtccgatcgtgtccgagtacagcggcgcggtgcgcttcgagaac
atcgaagaaggcgttaccgttgccaagcaggtcgacgaagtcaccggcctgtcgacgctg
gtcgtgatcacgcccaagacgcgcggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgagaacggtgaagacgtcaagatcgccggcaccgatcactcggtgaacatctcg
ttcccggtgggtgcgctgatcaccgtgcgcgacggccagcaggttgccgtgggcgaggtc
ctggcgcgtattccgcaggaatcgcagaagacccgcgacatcaccggcggtctgccgcgc
gtggccgagctgttcgaagcccgttcgcccaaggatgccggcatgctggccgaagtcacg
ggtacggtatcgttcggcaaggacaccaagggcaagcagcgcctggtcatcaccgacctg
gaaggcgtcagccacgagttcctgatcctgaaggaaaagcaggttctggtgcacgacggc
caggtggtgaacaagggcgaaatgatcgtcgacggcccggccgatccgcacgacatcctg
cgcctgcagggcatcgagaagctggcgacctacatcgtcgacgaagtgcaggacgtctac
cgtctgcagggcgtgaagatcaacgacaagcacattgaagtgatcgtccgccagatgctg
cgccgcgtgaacatcgtcgatccgggtgacaccgagttcatcccgggcgagcaggtcgag
cgttcggaactgctcaacgagaacgatcgcgtggtcgccgaggacaagcgtccggcttcg
tacgacaacgtgctgctgggtattaccaaggcctcgctgtcgaccgattcgttcatctcg
gcggcgtcgttccaggaaacgacccgcgtgctgaccgaagcggcgatcatgggcaagcgc
gacgacctgcgcgggctgaaggaaaacgtgatcgtcggccgtctcatcccggctggtact
ggcctggcgtatcacattgcccgcaaggacaaggaagcgctggaagccgccgagcgcgaa
gccgcccggcagctggccaacccgttcgaggatgcgccggttacggtcggcggcgaaccg
gaggctccggccgccgatacgccgtcggacgactcggccgagtga
DBGET
integrated database retrieval system
