Bifidobacterium bifidum S17: BBIF_0004
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Entry
BBIF_0004 CDS
T01328
Symbol
gyrB1
Name
(GenBank) gyrB1 DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
bbi
Bifidobacterium bifidum S17
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbi03032
]
BBIF_0004 (gyrB1)
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_0004 (gyrB1)
Enzymes [BR:
bbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BBIF_0004 (gyrB1)
DNA replication proteins [BR:
bbi03032
]
Prokaryotic type
DNA Topoisomerases
BBIF_0004 (gyrB1)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBIF_0004 (gyrB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ADO52209
LinkDB
All DBs
Position
5436..7598
Genome browser
AA seq
720 aa
AA seq
DB search
MAVLESDSEHESRDESGMPEQAPGSGLTASSAEQHDREVDEAIAQDELDDAQLDDTLSPD
HYDASDLKVLEGLEAVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTIL
PDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVN
ALSTRVDIEVRRQGFHWTQTYVNQHPTARLAKGAPMAEDESTGTSVTFWPDAAIFESTVY
DFETLRSRFQQMAFLNKGLKISLTDLREPDLAGDEVAGDDDSTEPKHQSVTYQYMNGIKD
YVSYLVKSRKATPVEEDVIDFEAEDLKIGISAEVAMQWTTAYSEAVHTFANTISTTEGGT
HEEGFRAALTSLVNRYARDKNILKEKDDNLSGDDVREGLTAVVSVKLTTPQFEGQTKTKL
GNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARIAAKKARENTRRKSIFES
AGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPETQAILPLRGKILNTERASIDR
MMKSDTIESLITAVGGGYGEEFDVSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPM
ITAGYVYVAMPPLYRLKWTRGDHDYVYTDRERDEKLAQGKAAGRQLPKGEGIQRYKGLGE
MTYQELWETTMDPEHRILKQIHIEDAAAADETFSMLMGDDVEPRRLFIQRNAKDVRFIDA
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
gtggcagttcttgaatcggattccgaacatgaatcccgtgacgagtccggcatgcctgag
caggctccgggcagcggtctgacggcgagcagcgccgagcagcatgaccgcgaggtcgat
gaagccatcgcccaggacgagctcgatgacgcccagcttgacgacaccttatcgcccgac
cattatgatgccagcgacctgaaggtgctggaaggccttgaggcggtgcgcatccgcccg
ggcatgtacatcggctccaccggcccgcgcggtctgcaccacctggtctacgagatcgtc
gacaactccgtcgacgaggcactggccggctacgccacgcatatcgaagtgacgatcctg
ccggacaacggcatccgcgtcgttgacgacggtcgaggcatcccggtcgacgaagttccc
ggcgaaggcgtctccggcgtcgagaccgtgatgaccaagctgcacgccggcggtaaattc
ggcggcggcggatacgcggtgtccggcggccttcacggtgtcggcatctccgtggtcaac
gcgctgtcgacgcgagtcgatatcgaagtgcggcgccagggattccactggacccagaca
tacgtcaaccaacatccgacggcccgcctcgccaagggcgccccgatggccgaggatgag
tcgaccggcacttccgtgacgttctggcccgatgcggcgatcttcgaaagcacggtatac
gacttcgagacgctgcgctcccgcttccagcagatggcgttcctgaacaagggactgaag
atttcactcaccgacctgcgcgagccggatctggccggcgacgaagtggccggcgatgac
gattccaccgagccgaagcaccagagcgtgacttaccagtacatgaacggcatcaaggat
tatgtctcgtacctggtcaagtcccgcaaggccactcccgtcgaggaggatgtcatcgat
ttcgaggccgaagacctcaagatcggcatctcggccgaggtcgcgatgcagtggaccacc
gcgtattccgaggctgtgcacacgttcgcgaacacgatctccaccacagaaggcggcacg
cacgaagaaggcttccgtgcagcgctgacctcgctggtgaaccggtatgcgcgagacaag
aacatcctcaaggagaaggatgacaacctctccggcgacgatgtgcgcgaaggcctgacc
gccgtcgtgtccgtcaagctgaccactcctcagttcgaagggcagacgaagaccaagctc
ggcaactccgaggcgaagaccttcgtgcagcgcgtgatgaccgacaagctcggcgactgg
ttcgacgcgcaccccgcagaggccaagaacatcatccagaaggccatcgaagcctcccgc
gcccgcatcgcggcgaagaaagcccgtgagaacacccggcgcaagtcgattttcgagtcg
gccggcatgcccgacaagctcaaggactgccagtccagcaaccccgaagagtgcgagctg
ttcatcgtcgagggtgattcggcaggcggctccgccattcaagggcgaaacccggaaacg
caggccatcctgccgcttcgaggcaagattctcaacaccgaacgcgcctccatcgaccgc
atgatgaagtccgacaccatcgagtcgctgatcaccgcggtcggtggcggctatggcgag
gaattcgacgtgagcaaggtgcgctaccacaaggtcatcatcatggccgatgcagatgtg
gacggtgcccatatcgccacgctgaacctgacgctgttcttccgttacatgcgaccgatg
atcaccgcaggatacgtgtatgtggccatgcctccgctgtaccgtctcaagtggacgcgc
ggcgatcatgattacgtgtacaccgaccgcgaacgcgacgagaaactcgcccagggcaag
gccgcaggccggcagctgcccaagggcgaaggcatccagcgctacaagggtctgggcgag
atgacctaccaggagctgtgggagaccaccatggatcctgagcaccgcatcctgaagcag
attcacatcgaggatgccgcggcagcggacgagaccttctcgatgctgatgggcgacgac
gtggaaccgcgccgtcttttcatccaacgcaatgccaaggatgtgcgtttcatcgacgct
taa
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