Bifidobacterium bifidum S17: BBIF_0443
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Entry
BBIF_0443 CDS
T01328
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBIF_0443 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbi03021
]
BBIF_0443 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_0443 (rpoC)
Enzymes [BR:
bbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBIF_0443 (rpoC)
Transcription machinery [BR:
bbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBIF_0443 (rpoC)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBIF_0443 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Pentapeptide
Pentapeptide_3
SF-assemblin
Motif
Other DBs
NCBI-ProteinID:
ADO52648
LinkDB
All DBs
Position
524011..528042
Genome browser
AA seq
1343 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRNWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIICERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTSVDEEQRHNDLPDLQDEFDTEIGNMAKRRDNEIENRARKVEED
LAQLEAEGEGRGPARTKLRNGAERDMAAIRQRYDDQIQRLNAVFDRFKSLKPGDLEGDVD
LWREMQDRYGDYFEGCMGAEAIQKRLQDFDLEAASKQLREEIDSGSGQRKARALKRLKVV
NAFLTTGNKPEAMVLTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LNAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDMNFAQNMKSAKRLVDRG
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHVVSMPSQDMILGLYYLTTVMDGAKGQG
RVFSSYAEAQMALDLHEIDMQAEVLIRLPKDFVLPTGWEPREITVVDPEPGSPDVVKEER
FHDGSVLFATSMGRILFNETLPVDYPFVNEQAKKKKLAKIVDDISTRYSTAQVAASLDAL
KDLGFTRAPWSGVTFAFSDVVEPPERNELVAQSEEEVAKINEQYDLGFYTEEDRRQAIID
VWTKCGEEVSKAIEKNFDPKNNLSIIVESGARGNMTQINQISGVRGLVNNPKGEIIPRPV
ESNYRRGLSVLEYFISEHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LTMRVADRDENGNLTLVKAADGGPYSRLLAADVIDPADGTTVLYKRDDALSMDVLNDLVA
HGVEEVQARSVLTCESKRGVCAKCYGWSLATNTLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPIAEFAGVVKVENTDHGRQITLTPDDTS
VEPIVYTDTRRAPMLVKNGDHVAAGDQLVEGSVDPKKILRILGPRAAQVNIVNEVHTVYR
SQGVDIHDKHIEVIVHQMLRRVTVIDSGDTPLLPGELVDQARFKAANKETIKNGGKPAAA
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYQNAVVEPDKAIRDTIYPNFGLGADMDGSQTDFSDADLSDVDFSNIDFGDLKLGDDF
NPDDFIDDQGGNDFGADSGNDLV
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggatcggcctggccaccgccgacgacatc
cgcaattggagccacggcgaggtcaagaagccggaaaccattaactaccgtaccctgaag
cccgagaaggatggtctgttcggcgagcagatcttcggacccacccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgaacggtgcggcgtg
gaggtcaccaagtcccgcgtgcgccgcgagcgcatgggccacatcgagctggccgccccc
gtcacccacatctggttcttcaagggcgtgccgagccgtctcggctacctgctggacatc
gctccgaaggacctggagaaggtcatctacttcgcggcctacatggtcacgagcgtggat
gaggagcagcgccacaacgacctgcccgacctgcaggacgagttcgataccgagatcggc
aacatggccaagcgccgtgacaacgagatcgagaaccgcgcccgcaaggtcgaggaggat
ctcgcccagcttgaggccgaaggcgagggcaggggccccgcacgcaccaagctgcgcaac
ggcgccgagcgcgacatggccgccatccgccagcgttacgacgatcagatccagcgtctg
aacgccgtgttcgaccgcttcaagagcctgaagccgggcgacttggaaggcgacgtggac
ctgtggcgcgagatgcaggaccgctacggcgactacttcgagggttgtatgggtgcagaa
gccatccagaagcgcctgcaggacttcgacctggaggccgcctccaagcagctgcgcgag
gagatcgactccggctccggccagcgcaaggcccgcgccctcaagcgcctgaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctgaccgtcatcccggtc
atcccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgat
ctcaacgacctctaccgtcgcgtgatcaaccgcaacaaccgtctgaagcgcctgatcgag
ctcaacgcgcccgagatcatgctgaacaacgagaagcgcatgctgcaggaagccgttgac
tccctgttcgacaacggccgccgcggccgtcccgtcaccggcgcctcgaaccgcccgctc
aagtccctttcggacatgctcaagggcaagcagggccgcttccgtcagaacctgctgggt
aagcgagtcgactactccggccgttccgtgatcgtcgtcggcccgtcgctgcgcatgcac
cagtgcggtctgccgaagccgatggcgctggagctgttcaagccgttcgtcatcaagcgt
ctggtcgacatgaacttcgcgcagaacatgaagagcgccaagcgtctcgtcgaccgcggc
gactccgaggtgtggggcgtactcgaagaggtcatatccgagcatcccgtgctgctcaac
cgtgcgcctacgctgcaccgtctgggcatccaggcgttcgagccgatcctggtcgaaggc
aaggccatccacctgccgccgctcgcctgcgccgcgttcaacgccgacttcgacggcgac
cagatggctgtccacctcccgctgagcgccgaggcacaggccgaggcccgctcgctgatg
ctcgcttccgacaacatcctcaagcccgccgacggccacgtcgtttccatgcctagccag
gacatgatcctcggcctgtactacctgacgaccgtcatggacggcgccaagggtcagggc
cgcgtgttctcctcatacgctgaggcgcagatggcgctcgacctgcacgagatcgacatg
caggccgaagtgctgatccgcctgccgaaggacttcgtgctgccgaccggctgggagccc
cgcgagatcaccgtcgtggatccggaaccgggcagccccgacgtcgtcaaggaagagcgc
ttccacgacggcagcgtgctgttcgctacctccatgggccgcatcctcttcaacgagacg
ctgcccgtcgactacccgttcgtcaacgagcaggccaagaagaagaagctggccaagatc
gtcgacgacatctccacccggtactccaccgcccaggtggccgcctcgctggatgcgctc
aaggatctcggcttcacccgcgcaccttggtccggcgtgaccttcgcgttctccgacgtc
gtcgagccgccggagcgtaacgagctggtcgcccagtccgaggaggaggtcgccaagatc
aacgagcagtacgacctcggtttctacaccgaagaggatcgccgccaggcgatcatcgac
gtgtggaccaagtgcggtgaggaagtctccaaggccatcgagaagaacttcgacccgaag
aacaacctctcgatcatcgtcgagtccggtgcacgaggcaacatgacccagatcaaccag
atttccggcgtgcgtggtctggtgaacaacccgaagggcgagatcattccgcgaccggtc
gagtcgaactaccgccgcggactgtccgtgctggagtacttcatctccgagcacggcgct
cgtaagggtctggccgataccgcactgcgtaccgcagagtctggctacctgacccgtcgt
ctggtggacgtctcgcaggacgtgattgtgcgcgaggaggactgcggcaccaagcgcggt
ctgaccatgcgcgtcgccgaccgcgacgagaacggcaacctgacgctcgtcaaggccgcc
gacggtggcccctactcccgtctgcttgcggccgacgtcatcgacccggctgacggcacg
accgtgctgtacaagcgcgacgacgccctgtcgatggacgtgctcaacgacctggtcgcg
cacggcgtcgaagaggtgcaggcgcgttccgtcctgacctgcgagtccaagcgcggtgtg
tgcgccaagtgctacggctggtcgctggccaccaacacgctggtggacgtcggcgaggcc
gtcggcatcgtcgctgcccagtccatcggcgagcctggtactcagctgacgctgcgttcc
ttccactccggtggtgtggccgctgcgtccgatatcacccagggtcttccccgtgtcacc
gagcttttcgaagcccgtaccccgaagggtgaggcgccgatcgccgagttcgccggcgtg
gtcaaggtggagaacaccgatcacggccgtcagatcacgctgacgccggacgacacgagc
gtcgaaccgatcgtctacaccgacacccgtcgcgcgccgatgctggtcaagaacggcgat
cacgtggccgccggcgaccagctggtcgaaggttccgtcgatccgaagaagatcctgcgc
atcctcggcccgcgtgccgcccaggtcaacatcgtgaacgaagtgcacaccgtgtaccgt
tcccagggtgtggatatccacgacaagcacatcgaggtcatcgtgcaccagatgctgcgc
cgcgtcaccgtgatcgattccggtgacaccccgctgctgcctggcgagctcgtcgaccag
gcgcgcttcaaggccgccaacaaggagaccatcaagaacggtggcaagccggccgccgct
cgtccggagctcatgggcatcaccaaggcctcgctggcaaccgactcgtggctgtccgcc
gcctccttccaggagacgacgcgcgtgctcaccgaagccgccctgagccagaaggtcgat
gacctcaagggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtactggc
ctcgcccgctaccagaacgccgtggtggagcccgacaaggccatccgtgacacgatctac
ccgaacttcgggctgggcgcggacatggacggctcgcagactgacttctccgatgccgac
ctgtccgatgtggacttctccaacatcgacttcggtgacctgaagctcggcgacgacttc
aatcctgacgatttcatcgatgatcagggtgggaacgacttcggcgccgactccggcaac
gatctcgtctga
DBGET
integrated database retrieval system
