Bifidobacterium bifidum S17: BBIF_0453
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Entry
BBIF_0453 CDS
T01328
Symbol
uvrD1
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03420
Nucleotide excision repair
bbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBIF_0453 (uvrD1)
03430 Mismatch repair
BBIF_0453 (uvrD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_0453 (uvrD1)
Enzymes [BR:
bbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBIF_0453 (uvrD1)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBIF_0453 (uvrD1)
MMR (mismatch excision repair)
Other MMR factors
BBIF_0453 (uvrD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADO52658
LinkDB
All DBs
Position
548228..552430
Genome browser
AA seq
1400 aa
AA seq
DB search
MNAPRFTDSPEQAKVVNAPTGDDVLVVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTF
TRKAASELLSRVSAAVLADGGDERFANRAFLKPEVSTYDAFFQTIVRQYGLLVGFDQNTQ
PLSQAGAIQLATTVVGRHMDILFEQDLGAFKTVVNGVLGLSHAIGNAMIGGSTTTMDEAI
GRVRAWDQAFLAQLDIAIGDTPVPDEAPKAKVPTKNKKDTEETFAAKQEEYRAQLRDICV
YKCAQLRDVTRRRETLLTLVEEYEREKRVQNMAEFSDFTIAAYQLVARFPSIGERYRRRY
THVLLDEYQDTSTTQAMLLATLFHPQSDADADRSSSRWREAARSAGGRSKDGVGLSRSAV
NAVGDPFQSIYAWRGASPGAFRMFQKDFGMPADAKPYPLSVTRRNTCIVLRAANNLTEPL
RIPPRRAGSSLMREVDVANLSAMDNAAEGTIGVLGFATFGQEADAVARFAKQAIARYRKD
AAATAASDTPHVAVLFRGKTHMAQFAQELERAGLTTLVVGYSALLERPEVQDLIALLHAA
ADHTDSASLMRLLATPRFGLGSESLTRLAGMAEDLDSQCRYRALVESGIIGSGSDGARAD
DGHDEATVPTSIDSGLVSEADGGSDIATFADPQVKAIVKQYRDRVPHAVFLIDMMMRDDL
PSLLSRRGGFDETTSHRIIQAGEVLQRVHAVTNHPLKEVIDAAVRALNLDIDTIVAQAVK
NPSQPVNPTQARSPLQSVAALVDTYTQEIVEGVNPTLRGFMSWVDSLGQIEEDTAAVPDT
PADVVLMTIHQAKGLEWDAVAVVSMQSGVFPSNQGGLHVELDAEHPGGGAGESWTPPEYK
ATVRSWADDPAAVPAPVRVDAGILPRFPHDANPDDAPVETLRALDDVEVIDDEFYGDLRS
KDIGDDMDVADPSSWYLTQEEEYGRRLLADERRLAYVALTRAKKDALLTYSQYSILDRDP
SQYLNRPGKRPSASKPSVFWTEMQDSLCHESGLVSACKSGSAGYSENADAIADSSPDLAV
AGAASGASAHPSLDQLGVDRPQGFFVGDHATEYERDVVEEAWNAPLEEREQGGGPTWPAK
LSEETLSKLTGGMSGDSGLVTDDPDSLLARARMLVEDPDLMPWSFGRGEREIDRYVRRQA
EHLLEHGRQNVTALQVRAGHMTQREERGYWRGLIRPIPRVASPAAEAGTLFHAWAEQFIN
AYGDGQSIDADGIGAYDSSSIETGTAGTCREPVTRESLLHDLSELEMKSDTLTAKERQLT
VWQRRLAESTWSERRPAWAERQIVVSIPQLGDVIVNGKLDAVFHGGLDANDPTKQYTIVD
WKTGRKPRKPQDIEHKLVQLDWYRLLLSYIEHVPLDRIDATLYYLSEPDEGARELHARAK
TEQEILAELSSGIPEGSDND
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaccacgatttaccgacagccccgagcaggcaaaagtcgtcaacgcgcccacc
ggcgatgacgtgctcgtcgtggccggagcgggcagcggcaagacctatacgatgacccgc
cgcatcatcaacctcatcgcacagggcgtgccggccgagcgcatcctcggcctcacattc
acgcgcaaggccgcgtcggaactgctgtcgcgcgtgtccgccgccgtgctggcggacggg
ggagacgagcgctttgcgaaccgggcgttcctcaagccggaggtgtcgacgtacgatgcg
ttcttccagaccatcgtgcggcaatacggcctgcttgtcggcttcgaccagaacacgcag
ccgctcagccaggccggtgccatacagctggcgaccaccgtggtcggccgtcacatggac
atcctcttcgagcaggatctcggggcgttcaagaccgtggtgaatggggtactggggttg
tcgcatgccataggcaacgccatgatcggtggcagcacaacaacgatggacgaggccatc
ggccgtgtgcgggcttgggaccaggcattcctcgcgcaactcgatatcgccattggcgat
acgccggttcctgacgaagcgccgaaggccaaggttccgacaaaaaacaagaaggacacg
gaggagaccttcgcggccaaacaggaggaataccgggcgcaacttcgtgacatatgcgtg
tacaagtgtgcacagctgcgcgacgtgacccggcgtcgggagacgctgctgacgctcgtc
gaggaatacgagcgggaaaagcgggttcagaacatggcggaattcagcgatttcaccatt
gccgcctaccagctcgtcgcgcgattcccctccatcggggagcggtaccgtcgccgttac
acgcacgtgctgcttgacgaataccaggacacctccaccacgcaggcgatgctcctcgcc
accctgttccacccccagtctgatgccgatgctgataggtcttcctcccgctggcgggag
gcggcgcgcagcgccggagggcggtccaaggatggcgtcgggctgtcgcgatccgcggtg
aacgcggtgggcgacccgttccagtcgatctatgcgtggcgtggtgccagtcccggagcg
ttccgcatgttccaaaaggacttcggcatgcccgccgacgcgaaaccatacccgctcagc
gtcacgcgacgcaacacctgcatcgtgctcagagccgccaacaacctcaccgagccgctg
cgcataccgccacggcgggccggcagctccctgatgcgcgaagtggacgtcgcgaacctg
tccgcgatggacaacgccgcggaaggtacgatcggcgtgctgggatttgccaccttcggc
caggaagccgatgccgtggcacgcttcgccaaacaggccatcgcacggtaccggaaggac
gccgccgccacggccgcctccgataccccgcatgtggcggtgctgttccgaggcaagacg
cacatggcgcaattcgcccaagaactcgaacgggcgggcctgacgacgttggtcgtcggc
tactccgcgctgctggagaggccggaagtccaggatctgatcgcattgctgcatgcggcc
gccgaccacaccgattcagcgtcgttgatgaggctgctggctacgccgcgattcggtttg
ggatccgaatcgctcacccgcctcgccggcatggccgaagatctcgacagccaatgccgc
taccgtgcactggtcgaatccggcatcataggttcaggttccgatggcgctcgtgccgat
gatggtcatgatgaggcaacagtccccacgtccattgattccggtctcgtttcggaagcg
gatggcggctccgacatcgcgacgttcgccgacccgcaggtgaaggccatcgttaagcaa
taccgggatcgagtgccgcatgcggtgttcctcatcgacatgatgatgcgggatgacctg
ccgtcgctgctgtcgcgtcgcggcggattcgacgagacgacatcacaccgtatcatacag
gcgggcgaagtactgcagcgtgtgcatgccgtgactaatcacccgctgaaggaagtgatt
gacgccgcggtgcgggccttgaacctcgacatcgacacaatcgtcgcccaggcggtcaaa
aacccctcccagccggtgaaccccacgcaggcgcgttcgcctctgcagtcggtcgccgca
ctggtcgacacctatacgcaggaaatcgtcgaaggcgtgaatccgactttacgtggattc
atgtcatgggttgactcgcttggccagatagaggaggataccgcggcggtgcccgacact
cctgcggacgtggtgctgatgaccatccatcaggccaagggattggaatgggacgccgtc
gccgtggtgtccatgcaatcaggagtgttccccagcaatcagggcggtttgcatgtcgag
ctggacgcggagcatcccggcggcggtgccggcgaatcgtggactcccccggaatacaag
gcgacggttcgttcatgggcggacgacccggccgcggtacctgcgcccgtgcgcgtcgac
gccggtatcctgccacgtttcccgcacgacgcgaatccagatgacgccccggtcgaaacg
ctgcgtgccctggacgatgtcgaagtcatcgacgacgagttctacggagacctgcgcagc
aaggacatcggagacgatatggatgtcgccgacccgtccagctggtatctcacccaggaa
gaggaatatggccgacgtctgctggctgacgaacggcgactcgcatatgtggcgctgaca
cgggccaagaaagacgcgctgctcacctacagccagtattcgattctggatcgagacccg
agccagtacctgaaccgtcccggcaaaagaccgagcgcctcgaagccgtcggtattctgg
acggagatgcaggactcgctatgccatgagagcggtctggtatccgcgtgcaagagcggg
agcgcgggatactccgaaaatgcggatgccattgccgacagtagccctgacttggcggtg
gccggtgcggcatcaggtgcgtctgcgcacccatcgctggaccagctgggtgtggacagg
ccgcaggggttcttcgtcggcgaccacgccaccgaatatgagcgggatgtcgtcgaagag
gcatggaacgccccattggaggaacgcgaacagggcggcggcccgacatggccggccaag
ttgtccgaggaaaccctgtcgaagctcaccggcgggatgtccggcgattccgggcttgtg
accgacgatccggactccctgctggcacgtgcccgaatgctcgttgaagaccccgatctg
atgccatggtccttcggccgaggcgagcgcgagatcgaccgctatgtccgccgtcaggcg
gagcacctgctggagcacggacggcagaacgtcaccgcgttgcaggtgagagcggggcat
atgacccagcgcgaggaacgcggctattggcgtggcctgatccggcccatcccgcgcgtc
gcatcccccgccgctgaggcgggcaccctgttccacgcatgggcggaacaattcatcaac
gcctacggcgacggccaatcaatagatgcagacggcatcggcgcatacgattccagcagc
atcgaaaccggtacggccggcacctgccgcgagccggtgacccgcgaatccctgctgcac
gatctgtccgaactggaaatgaaatccgacacactgacggcgaaggaacgacagctcacc
gtatggcagcgtcgactcgccgaatcgacgtggtcggagcgtcgcccggcgtgggcggaa
cgccagatcgtcgtgtcgattccccagctcggtgacgtcatcgtcaacggcaaactcgat
gcggtgttccacggcggactggacgcgaacgatccgacgaagcaatacaccatcgtcgac
tggaagaccgggcgcaagccacgcaagccgcaggacatcgaacacaagctcgtgcagctc
gactggtatcggctgctgctgtcgtacatcgagcacgtgccgctggacagaatcgacgcc
accctctactatctgagtgagcctgatgaaggcgcgcgcgagctgcacgcccgcgcgaaa
accgaacaagagatcctagccgagttgagctccggcattcccgaaggatccgacaatgac
tag
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integrated database retrieval system
