Bifidobacterium bifidum S17: BBIF_0461
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Entry
BBIF_0461 CDS
T01328
Name
(GenBank) Conserved hypothetical protein with metallo-beta-lactamase domain
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBIF_0461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbi03019
]
BBIF_0461
Messenger RNA biogenesis [BR:
bbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBIF_0461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Anti-Pycsar_Apyc1
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
ADO52666
LinkDB
All DBs
Position
558408..560249
Genome browser
AA seq
613 aa
AA seq
DB search
MAQEQQKKNNSRRSRSGGASRRRGSANRNTSNAGSFKGQATAPQQDDVLIAPPKYRKGSM
RITPLGGLGEIGRNMNVIEYNGHLLLIDCGVLFPEEEQPGVDLILPDFSYIKNRLDKVDA
LVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFVEAKCQEHNQHPTMVEVKGRDKLKV
GPFNLEFVTVTHSIPDALAVYVKTPAGSLIDTGDIKLDQLPLDHKITDLVEFGKIGEQGV
DLLMMDSTNAEVPGFVKPETSIGPALDQAFAQASRKIIVASFSSHVHRVQQVVDVAHKYG
RKVVFVGRSMVRNMSIAADLGYLHIPEGTVIDLKKAHDVQDDKLVFMCTGSQGEPMAALG
RIADGNHRDITINEFDTVILASSLIPGNEHGVYKVINKLVQLGARVVNRDNAAVHVSGHC
NEGELLYMYNIVKPKCAMPIHGENRHLVANGLIAVKTGVDPKNVVLAEDGDVVDLYHGQA
AVVGSVPCGYVYVDGDSVGEITDEELEKRRILGTEGFVSSFVVVDTEASEVVTGPKIFLN
AVAEDESEFDKIRHQIVEQLQDAMMQGTKDTHRLQQIMRRTLGGWIARQLHRKPMIVPVV
ADIAQDIIEEPSK
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagaacaacaaaagaagaacaattcacgcaggtcccgttccggtggcgcgtcg
cgccgccgcggatccgcgaatcgcaacaccagcaacgccggctcgttcaagggccaggcc
accgctccccagcaggacgacgtcctgatcgccccgccgaagtaccgcaagggttcgatg
cgcatcacgccgctcggcggtctgggcgaaatcggccgcaacatgaacgtaatcgaatac
aacggtcacctgctgctcatcgactgcggcgtgctcttccccgaagaggagcagccgggc
gtcgacctgattcttcccgatttcagctacatcaagaatcgtctcgacaaggtcgacgcg
ctcgtgctcactcatggccatgaggaccatatcggcggcgtgccctacctgctcaagctg
cgcccggacatcccgctgatcggctccaagctgaccctcgccttcgttgaggcgaaatgc
caggagcacaaccagcatcccaccatggtggaggtcaagggacgcgacaagctcaaggtc
ggcccgttcaacctcgaattcgtcaccgtcacccactcgatccccgacgcgctcgccgtg
tacgtcaagacgcccgccggctccctgattgacaccggcgacatcaagctcgaccagctg
ccgctcgaccacaagatcaccgatctggtggaattcggcaagatcggcgagcagggcgtg
gatctgctgatgatggactccaccaacgccgaggtgccaggcttcgtcaagccggagacc
tccatcggacccgcgctcgaccaggcgttcgcgcaggcgagccgcaagatcatcgtcgcc
agcttctcctcgcacgtgcaccgcgtccagcaggtcgtcgacgtcgcccacaagtacggg
cgcaaggtcgtcttcgtcggccgctcgatggtgcgcaacatgtccatcgccgccgacctc
ggctacctgcacatccccgaaggcaccgtcatcgacctcaagaaggcgcacgacgtgcag
gacgacaagctcgtcttcatgtgcaccggttcgcagggtgagccgatggccgccctcgga
cgcatcgccgacggcaaccaccgcgacatcaccatcaacgagttcgacacggtgatactc
gccagctctctgattccgggcaacgagcatggcgtgtacaaggtcatcaacaagctcgtg
cagctcggcgcgcgcgtcgtcaaccgcgacaacgcggccgtgcacgtgtccggtcactgc
aacgagggcgagctgctgtacatgtacaacatcgtcaagcccaaatgcgcgatgcccatc
cacggcgagaaccgccacttggtcgccaacggcctgatcgccgtcaagaccggcgtcgat
ccgaagaacgtggtgctggcggaggatggcgacgtcgtcgacctgtaccacggtcaggcc
gcggtcgtcggctccgtgccgtgcggctacgtgtacgtggacggcgattcggtcggcgag
atcaccgacgaggagcttgagaagcgccgcatcctcggcaccgaaggcttcgtgtccagc
ttcgtcgtggtcgataccgaggcctccgaagtcgtcaccggcccgaagatcttcctcaac
gcggtcgccgaagacgaaagcgagttcgacaagatccgccatcagatcgtcgagcagctg
caggacgcgatgatgcaggggacgaaggacacgcacagactgcagcagatcatgcgccgc
acgctcggcggatggatcgcccgacagctgcaccgcaagccgatgatcgttccggtcgtc
gccgacatcgcccaggacatcatcgaagaacccagcaagtaa
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