Bifidobacterium bifidum S17: BBIF_0496
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Entry
BBIF_0496 CDS
T01328
Symbol
uvrD2
Name
(GenBank) DNA helicase II containing UvrD/REP helicase domain
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03420
Nucleotide excision repair
bbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBIF_0496 (uvrD2)
03430 Mismatch repair
BBIF_0496 (uvrD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_0496 (uvrD2)
Enzymes [BR:
bbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBIF_0496 (uvrD2)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBIF_0496 (uvrD2)
MMR (mismatch excision repair)
Other MMR factors
BBIF_0496 (uvrD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
NAT_N
PhoH
Motif
Other DBs
NCBI-ProteinID:
ADO52701
LinkDB
All DBs
Position
609242..610741
Genome browser
AA seq
499 aa
AA seq
DB search
MSASSETILEGLDDAQMSAVTALDGPVRIIAGAGAGKTRTVTRRIAYACARGDWDARKVL
AVTFSVKAAAEMRARLQTLGVGDDVTAATFHSAALQQLRRVWDDIFETPLPHVTSDQREN
VERAIRRVTNAADIDAQQVRDVRAEINWTKVSLVAPDDYPRVCSATHRQPPAELDPQRFA
DVITAYEWEKTVRGQIDFDDILLLMCHVMDDYEELAASIRSSIGWLTVDEYQDVSPLQHR
LMTLWLGNNRNVCVVGDPAQTIYSFAGASSYDLLHFADEFRPLAADVTLNTDYRSTPQVV
RYANRVLAAAPEREQYLVLRSARSGGPRVGHTCYDTDEEEARGIAARIARLVAGGVDPGA
CAVLTRINAQQPAICAALRAEGLRYRVRRDSGWQNSALADDAQSRLALLEAKGLSAAASS
VTVSTIHASKGLEFPYVFIVGCSEGLIPYGASIAGEALEEERRLLYVGVTRAEDGLHMSY
ARAKDEGSRPNRLPSRFLS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcatcgagcgagacgattcttgaggggctggacgatgcgcagatgtcggccgtt
accgcgttggacggcccggtgcgcatcatcgcgggggccggagcgggcaagacccgcacg
gtgacccgtcgcatcgcctatgcgtgcgcgcggggggattgggatgcccgcaaggtgctc
gccgtgacgttctcggtgaaggcggccgcggagatgcgcgcgcggctgcagacgctgggg
gtcggcgacgacgtgaccgctgcgacgttccattctgcggcattgcagcagctgaggcgt
gtgtgggacgacatcttcgagacgccgctgccgcacgtgacctccgaccagcgcgagaac
gtggagagggcgatcagacgggtcaccaatgccgcggacatcgatgcgcagcaggtgcgt
gacgtcagggcggagatcaactggacgaaggtgtcgctggtggcgcccgacgactatccg
cgcgtgtgctcggcgacgcaccgtcagccgccggcggagctcgatccgcagcgtttcgcc
gacgtcatcacggcgtacgagtgggagaagacggtccgcggacagatcgatttcgatgac
attctgctgctcatgtgccatgtcatggatgattacgaggagttggccgcctcgatccgc
tcgtcgattggctggctgacggtcgacgagtatcaggacgtgtcgccgttgcagcatcgg
ctgatgacgctgtggctcggaaacaaccgcaacgtgtgcgtggtcggcgatccggcgcag
acgatctactcgttcgccggggcgagcagctatgacctgctgcatttcgcggacgagttc
cgcccgctggccgccgacgtcactctgaacacggattaccgctcgacgccgcaggtggtg
cggtatgcgaaccgggtgctggccgccgctccagaacgggaacagtatctggtgctgcgt
tcggcgcgttcgggcgggccacgcgtgggccacacatgctatgacaccgatgaggaggag
gcgcggggcatcgccgcgcggatagcgcgtctggtcgccggcggtgtggatcccggcgct
tgcgcggtgctgacgcgcatcaacgcgcagcagcccgcgatctgcgccgcgcttcgggcc
gagggattgcgataccgggtgaggcgtgactccggatggcagaactcggcgctcgcggat
gatgcgcagagccgtctggccctgctggaggccaagggattgagcgctgcagcctcatcg
gtgaccgtttcgacgattcacgcgtccaagggtctggagttcccgtacgtgttcatcgtc
ggttgctcggaggggctgattccctacggcgcatcgattgcgggcgaggctttggaggag
gagcggaggctgctgtatgtcggcgtcacccgcgccgaggacggattgcacatgtcgtac
gcgcgggccaaggacgagggctcccgtcccaatcgcctccccagccgcttcctcagctga
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