Bifidobacterium bifidum S17: BBIF_0537
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Entry
BBIF_0537 CDS
T01328
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03030
DNA replication
bbi03430
Mismatch repair
bbi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBIF_0537 (dnaE)
03430 Mismatch repair
BBIF_0537 (dnaE)
03440 Homologous recombination
BBIF_0537 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbi03032
]
BBIF_0537 (dnaE)
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_0537 (dnaE)
Enzymes [BR:
bbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBIF_0537 (dnaE)
DNA replication proteins [BR:
bbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBIF_0537 (dnaE)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBIF_0537 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
tRNA_anti_2
DUF5487
Motif
Other DBs
NCBI-ProteinID:
ADO52742
LinkDB
All DBs
Position
658917..662486
Genome browser
AA seq
1189 aa
AA seq
DB search
MAGNFVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAVDSG
VKPIIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAENDEG
LVNLIKASSVANLEGRVMRYPRMDKEVLSTYSKGVIASSGCPSGIIQTRLRLGQFDEALR
AAGEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEADKDA
QDAMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCNVIFD
DHEDGAFMPQFDCPEGWDETSLFLKKVEEGLEKRYDGNPPMEVLKQADYECGVICQMQFC
GYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKHGLIFERFLNPERVS
LPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGFPFEMGTR
ITEALPPAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKRITEEAKGIEGLIRQ
TGVHACATIMGSAPITDTSPLLERTDGTVTTTFEYHTCETLGLVKMDFLGLSNLTVIRDT
LTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDIS
ALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLDETYGLIIYQEQVQSA
ARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAAEAIWEILVPFSG
YAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTALYLGEARRMGIQVLS
PDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGKYVNFMDFIRRVPLTA
LNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAEGQFDLFSDTEDSGAD
AMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLAGMREMSIAHLIDRAP
TMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYEAASTELIQDA
VVQVRGQVEVRDETVSMRATEMQPVALETDDERPFLITLPLVALGRGNMQQLAQIITRHP
GFCEVRLAVLDAKGNARVMTFGDRFRVKRDTSLFAEIKSLFGPSCLPTA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaacttcgtgcaactgcataaccacacgcactactcgctgctggatggggca
tccaaggtgcccgatctggtcaagcgcgtcaaggagctgggcatgccggcggtcggcatc
accgaccatggcaacatgcacggcgcctacgagctgtggcgtgcagcggtcgattccggc
gtcaagccgatcatcggcatcgaggcgtatgtgacccctgaaaccgcgcggcaggacaag
acgcgcgtgtcatgggacaccaactggaccccggttcccggccatgcccgcaaccccgac
gatgtctcgggcggcggcctgatcacccacctgaccatgtgggcggagaacgacgaaggg
ctggtcaacctcatcaaggcgtcgtccgtcgccaacctcgaaggccgtgtcatgcgatat
ccgcgtatggacaaggaggtgctgtccacctactccaaaggcgtgatcgcctcgtccggc
tgcccctccggcatcatccagacccgtctgcgcctaggccagttcgacgaggcgctgcgt
gccgccggcgagttccaggacatcttcggcaaggacaatttctacatcgagctgatggac
cacggactgtccatcgaaagcaaggttaccggcgatctgctgaccattgccaagaagctc
ggcgcgcccctgctcgccaccaacgactcgcactacgtcatggaggcggacaaggacgcc
caggacgccatgctgtgcatcaactccggcgccacgctggacgaccccaaccgcttcaag
ttcgaaggatcgggatactacatcaaatccgccgaggagatgcgcgagctgttcaaggac
catcccgacgcctgcgacaacacgctggagatcgcggaacgctgcaacgtgatcttcgac
gaccatgaggatggcgcgttcatgccgcagttcgactgccccgaagggtgggacgagacc
tcgctgttcctcaagaaggtcgaggagggcctggagaagcgctacgacggcaacccgccg
atggaggtgctcaagcaggccgactatgaatgcggcgtcatctgccagatgcagttctgc
ggctacttcctcgtcgtcgccgactacatcaactgggcgaaggagcacggcgtgatggtg
ggcccggggcgaggctccgccgcaggggccatggtcgcctatgcgatgggcatcaccgag
ctcgatccgctcaagcacggcctgatcttcgagaggttcctgaaccccgagcgtgtgtcc
ctgcccgatatcgacgtcgacttcgatcccgaaggccgcatgcgcgtgctgggctatgtg
gccgacaagtacggccatgacaaggtcgcccaatgcgtgatctacggcaccatcaagacc
aagcaggcgctcaaggactccgcgcgcatcatgggattcccctttgagatgggcactcgt
atcaccgaggcgctgccgccggccgccaccggaggcaaggacatcagcgtgcacgacatc
ttcgacccgagcgccaagcgctacgccgaggcgcgcgaataccgcgagctgtacgactcc
gatcccgaagtcaagcgcatcaccgaggaggcgaagggcatcgaggggctgattcgccag
accggagtccacgcgtgcgccacgatcatgggttccgcgccgatcaccgacacctcgccg
ctgctggagcgcaccgacggcaccgtcaccaccacgttcgagtaccatacgtgcgaaacg
ctcggcctggtcaagatggacttcctcggcctgtccaacttgacggtcatccgcgacacg
ctcaccaacatcgagcacaacggcaagggcgtcatcgactacacgaagatccctctcgat
gaccgggagacgtaccagctgctgtcgcgcggagacacgctcggtgtgttccagctcgat
tccgacggcatgcgctcgctgctcaagacgctcaagcccgataacttcaacgacatctcc
gcacttattgccctgtaccgaccgggcccgatgtcgatggactcgcacaccaactacgcc
aagcgcaagaacggcctgcagaagattacgcctatccaccccgagctcgacgagcccctc
aagcaggtgctcgatgagacgtacggcctgatcatctatcaggagcaggtgcagtcagcc
gcgcgtatcctggccggctattcgctgggcaaggcagacgtgctcaggcgagccatgggc
aagaagaagcccgaggtgctggccaaggagaaggtgccgtttttcgccggcatgaaggag
catggctattccgaggaggccgcagaggcgatctgggagatcctggtcccgttctccggc
tatgcgttcaacaaggcgcactccgccgcgtacggcctgatctcctactggaccgcatac
ctcaagacgcactacccggtcgagttcatggccgcgctgctgcagggcgcggcgaccaac
aagaacaagaccgccctgtatctgggcgaggctcggagaatgggcatccaagtgctctcc
ccggatgtcaacgagtcggtctacgagtactccgcagtcggcgacgtcgtccgattcggg
ctcggggctatccgcaacgtcggcgagaatgcggtcaaggacatcatcgcggaacgcgag
acgggccgtggcaaatacgtgaacttcatggacttcatccgccgcgtgccgttgaccgcg
ctgaacaggcgactggtcgaatcgctgatcaaggcgggcgcattcgattcgatcgacccg
aaccgccgggcgctgttcaccgtgcacgagtcggcgatcgactcggtggtcggccttaag
cgcaagcaggcggaaggacagttcgacctgttctccgacacggaggattcgggcgccgac
gcgatgggggatgcgacggtcgccgtgccggacatcgaggaatgggacaagaaggacaag
ctcaagttcgagcgcgatatgcttggcctctacgtgtcggaccatccgctgagcggcatg
caagcagtgctcgccgggatgcgggagatgtccatcgcccatctgattgaccgtgcgccc
accatgcccagcgggcagcaggtcacgctggcgggactgattaccaacgtcgatcgacga
gtctcgaagaagggcaacccgtgggcgatcgtcaccatcgaggacatggaaagctccatc
cagtgcatgttcttcggcaaagtgtacgaggcggcgagcacggagctcatacaggatgcg
gtcgtgcaggtgcgcggccaggtcgaggttcgggacgagaccgtcagcatgcgcgccacg
gaaatgcagccggtcgcgctggagaccgatgacgagcgtccgttcctgatcaccttgccg
ctggtggccctggggcgcggcaacatgcagcagcttgcgcagatcatcacgcggcatccg
ggattctgtgaagtgcggcttgccgtgctcgacgccaagggcaacgcacgggtgatgacc
ttcggcgataggttccgcgtcaaacgcgacaccagcctgttcgccgagatcaagagcctg
ttcggcccgagctgcctgccgacggcctga
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