Bifidobacterium bifidum S17: BBIF_0638
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Entry
BBIF_0638 CDS
T01328
Symbol
xth
Name
(GenBank) Exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BBIF_0638 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_0638 (xth)
Enzymes [BR:
bbi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
BBIF_0638 (xth)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
BBIF_0638 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
ADO52843
LinkDB
All DBs
Position
780174..781031
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AA seq
285 aa
AA seq
DB search
MITITTSNVNGIRAAKRKGIETWAGEHAPDIWCMQEVRAPQDELNPIFGEFGFEYATAGK
IADQSELTAMNEVCRVKGRAGVGLLTDLPVTARRYGLSGLDEDVDSGRWIEADVTTPQGY
GITVACVYVHAGNSDDPVKMAQKYRFLDTMLTRMGELRDEASRGGRQAVLCGDFNIAHTP
LDIKNAKANIKHAGFLPAERAYIDRWLGEYEFVDVIRSLAGDIQGPYTWWSQRGRAFDNN
VGWRIDYQFATPELAETARGFVIDKAPSYDARWSDHAPLTVTYDV
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccatcaccacatccaacgtgaacggcatccgcgccgccaagcgcaagggcatc
gagacatgggcgggcgagcacgccccggacatctggtgcatgcaggaggtccgcgccccg
caggacgagctcaatccgatattcggcgagttcgggttcgaatacgccaccgccggcaag
atcgccgaccagagcgagctgacggcgatgaacgaggtctgccgcgtcaagggacgcgcc
ggcgtcgggctgctgaccgacctgcccgtgacagcccggcgatacggtttgtccgggctg
gacgaggatgtggattccggccgatggatcgaggccgacgtgacgacgccacagggctat
ggaatcaccgtcgcatgcgtgtacgtgcacgcgggcaacagcgacgatccggtgaaaatg
gcgcagaaataccgcttcctcgacaccatgctcacgcgcatgggcgagctgcgggacgag
gcctcgcgcggcggcaggcaggccgtgctgtgcggcgacttcaacatcgcgcacacgccg
ctcgacatcaagaacgccaaggccaacatcaagcatgccgggttcctgcccgccgaacgc
gcctacatcgaccgctggctgggggagtacgagttcgtggacgtcatacgctcgctcgcc
ggcgacatccaggggccgtacacgtggtggagtcagcgcggcagggcgttcgacaacaac
gtcggctggcgcatcgactatcagttcgccactccggaactcgccgagacggcacgaggc
ttcgtcatcgacaaggcgcccagctatgacgcccgctggtccgaccatgcgccgctgacc
gtcacgtatgacgtgtga
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