Bifidobacterium bifidum S17: BBIF_1216
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Entry
BBIF_1216 CDS
T01328
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
bbi
Bifidobacterium bifidum S17
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BBIF_1216 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbi03021
]
BBIF_1216 (rpoD)
Transcription machinery [BR:
bbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BBIF_1216 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DprA_WH
Hamartin
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ADO53421
LinkDB
All DBs
Position
complement(1451697..1453217)
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AA seq
506 aa
AA seq
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MATKDTMATTVPDDTDAKTKSEKKGTAARTASTADKKTAAGRKSAAGKKTSSRSAASKST
VRESSAKAAAPAKPTRKRAASKSAKAVKDETEEMAKTEELANEDSSDDLDDVQVDEDGLE
NLDDDLDDVDDGGLDGDDDDIDDESGEDDDVPEDEEDDEGTEPGRKEPEQPKEKGAFVVR
DDDDDENLTPSGNPKRRVIAAGATADPVKDYLKQIGRVSLLNAEQEVDLSERIEAGLYAQ
HLLDTESDGMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQE
GNLGLIRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQ
RQMLQDLGREPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTD
AIAPSDAVAFSLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERI
RQIESKTMSKLRHPSRSQTLRDFLDQ
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttggccacgaaggatacgatggcgacgacagtcccggacgatacggacgccaagacgaaa
tccgagaagaaggggaccgccgcgcgtacggcctctacggcagacaagaagaccgcggcg
ggcaggaagtccgccgcgggcaagaagacctcgtcgaggtccgctgcgtccaagtccacg
gtacgcgagtcctcggcgaaggcagccgcgcccgcgaagcccacccgcaagcgcgccgcg
tccaagtcggcgaaggccgtcaaggacgagaccgaggagatggcgaagaccgaggaactc
gccaacgaggattcctcggacgatctcgacgacgtccaggtcgatgaggatggtctggag
aaccttgacgacgatctcgacgatgtcgatgacggcggtctggatggcgacgatgatgac
attgatgacgaatccggtgaggatgacgacgttcccgaggacgaagaggacgacgagggg
actgaacccgggcgcaaggagcctgaacagcccaaggagaagggcgcgttcgtggtgcgc
gacgatgacgacgacgagaacctgaccccgtcgggcaatccgaagcgccgcgtcatcgct
gcgggcgccacagcggatccggtcaaggactatctcaagcagattggccgtgtcagcctg
ctgaacgccgagcaggaggtggacctctccgagcgcatcgaggccggcctgtacgcccag
catctgctcgataccgagagcgacggcatggacttcaagcgcaagcgcgagctcaagtgg
gcggcgaacgacggcaagaaggccaaggaccacctgctggaggcgaacctgcgactcgtg
gtgtcgctggccaagcgctacaccggtcgtggcatgctcttcctcgacctgattcaggaa
ggcaacctgggcctcatccgagccgtcgagaagttcgactggaagaagggcttcaagttc
tccacctatgccacgtggtggatccgtcaggccatcacccgcgccatggccgatcaggca
cgcaccatccgcgtgcccgtgcacatggtcgaggtcatcaacaagctgtcgcgcgtccag
cgccagatgctgcaggacctgggccgcgagcccacgccggacgagctggcccgcgagctc
gacatgccggtcgagaaggtgcaggaggtgcagaagtacggccgcgagccgatctcgctg
cacacgccgctgggcgaggacggcgattccgagttcggcgacctcatcgaggacaccgac
gccatcgcgccgtccgacgcggtcgcgttctcgctgctgcaggagcagttcaagcaggtg
ctggagactctgagcccccgcgaggccggcgtcatcaagatgcgttacggtttggaggac
ggccagcccaagacgctggacgatatcggccgcgtgtacggcgtgacccgtgagcgtatc
cgccagatagagtccaagacgatgtcgaagctgcgccacccgtcgcgctcccagaccctg
cgcgacttccttgatcagtga
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