Bifidobacterium bifidum S17: BBIF_1235
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Entry
BBIF_1235 CDS
T01328
Name
(GenBank) RNA modification enzyme, MiaB family
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
bbi
Bifidobacterium bifidum S17
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbi03016
]
BBIF_1235
Enzymes [BR:
bbi01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
BBIF_1235
Transfer RNA biogenesis [BR:
bbi03016
]
Prokaryotic type
tRNA modification factors
Methylthiotransferases
BBIF_1235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
B12-binding
RNase_J_b_CASP
Motif
Other DBs
NCBI-ProteinID:
ADO53440
LinkDB
All DBs
Position
complement(1475441..1476880)
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AA seq
479 aa
AA seq
DB search
MTESERTSTLTDPTLGATTGRGKGVFYVHTLGCQMNVHDSERIAGVLEDDGYIPATEEQA
ADKDVDLIIMNTCAVRENAAERMYGTIGLWADLKRTHPNMQIAIGGCMAQLDRKRIAQKA
PWVDAVFGTKNIGSLPRLLDQARMAGTCQVEVADKLDYFPSQLPVARASKVSSWVSISIG
CNNTCTFCIVPTTRGKEHDRRPGDILAEIRRCVDEGAKEVTLLGQNVNSFGYGIGDRYAF
SKLLRACGDIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDKILRAMR
RSYRSAKFLDILRKVREAMPDAQISTDVIVGFPGETDEDFEATMDVVRQARFQSAFTFEY
SPRPGTPAAEMEQVPHEVVQERFDRLVKLQEQITEEELAKFEGRDVEVMITGAQGKKDSA
THRVTGRERTGVLVHIGVPDGEPMPQIGDFVTATVTHAGRHNLIADPDVNAGQTYAVRR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagtcggagcgcacctccacattgacggacccgacccttggcgccacaacgggg
cgcggcaagggcgtattctacgtgcacacgctgggatgccagatgaacgtgcatgattcc
gagcgaatcgccggtgtgctcgaagatgacggatacatcccggcgaccgaggaacaggcg
gcggacaaggacgtcgacctgatcatcatgaacacgtgcgcggtgcgagagaacgccgcg
gaacgcatgtacggcaccatcggcctgtgggcggacctcaagcgcacgcatccgaacatg
cagatcgcgatcggcggatgcatggcccagcttgaccgcaagaggatcgcacagaaggcg
ccgtgggtggatgcggtgttcggcacgaagaacatcggctcgctgccgcgcctgctggat
caggcccgcatggcggggacctgccaggtcgaagtggccgacaagctggactatttcccc
agtcagctgccggtcgcccgcgcttcgaaggtgtcgagctgggtgtccatctcgatcggc
tgcaacaacacgtgcacgttctgcatcgtgcccaccacgcgtggcaaggagcatgaccgc
cgtcccggcgacatcctcgcggagattcgccgatgcgtggatgaaggcgccaaggaggtc
acgctgctcggccagaacgtcaactcgttcggttacggcatcggcgaccggtatgcgttc
tccaagctgctgcgggcctgcggagacatcgagggattggagcgtgtgcgtttcacgtcg
cctcacccggcggcgttcaccgatgacgtgatcgcggcgatggccgagacgccgaacgtc
atgcaccagctgcacatgccgttgcagtcgggctccgacaagatcctgcgtgcgatgcgt
cgctcctaccgttccgccaagttcctggatatcctgcgcaaggtgcgcgaggcgatgccg
gacgcgcagatcagcaccgatgtcatcgtcggattccctggcgaaacggacgaggatttc
gaggcgacgatggatgtggtgcgtcaggcgaggttccagtcggcgttcacattcgaatac
tcgccgcgtcccggaacccccgcggccgaaatggagcaggtcccgcatgaggtcgtgcag
gaacggttcgaccggctggtgaagcttcaggagcagatcacggaagaggagctcgccaag
ttcgagggccgtgacgtcgaagtgatgattaccggggctcaaggcaagaaggattccgcg
acacatcgcgtcaccggtcgtgaacggaccggcgtgctggtgcatatcggcgtgccggac
ggtgagccgatgccgcagatcggtgatttcgtgaccgcgaccgtcacccatgccggtcgc
cacaacctcatcgccgacccggatgtcaacgccggccagacgtatgcggtccgccggtga
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