Bifidobacterium bifidum S17: BBIF_1677
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Entry
BBIF_1677 CDS
T01328
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03030
DNA replication
bbi03430
Mismatch repair
bbi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBIF_1677 (holB)
03430 Mismatch repair
BBIF_1677 (holB)
03440 Homologous recombination
BBIF_1677 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbi03032
]
BBIF_1677 (holB)
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_1677 (holB)
Enzymes [BR:
bbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBIF_1677 (holB)
DNA replication proteins [BR:
bbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBIF_1677 (holB)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBIF_1677 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
AAA_5
AAA_22
AAA_16
Rap1a
RuvB_N
TniB
AAA_18
KTI12
Motif
Other DBs
NCBI-ProteinID:
ADO53882
LinkDB
All DBs
Position
complement(2023975..2025159)
Genome browser
AA seq
394 aa
AA seq
DB search
MSVWDSIVGQQAVVGQMQAIVSGDPKALAQSWLICGPPGSGRSNVARAFAAALESPDRGL
SDEPTNITRQVLSGTHPDVTTLATNKVTIGIDDVRQLILTSEQMPSTAPWRIIIIEDVDR
MLERTTNVLLKEIEEPSPHTIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTKAVADYLMAS
VNPALPAERQFDRHVAVRAARLAEGHIGIAKLYASDTQVMSDRDELIVGLLGLRKASDAV
LLADDLIDTAKSQAEADVNRQTAAAEADFRRINGLGEQDRIPPKLRGAYNAIAKKDEIKR
QATRRSRDVLDRALNSAASIYRDIAVLQNNAEDAVGLINMENRTAIAELSARLSRQEVVD
RLEAIAVARKRLLGNGNPMLVFEALFCALIPGRL
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatgggactccattgtcggccagcaggcagtggtcggccaaatgcaggccatc
gtctccggcgacccgaaggcgctggcccagtcgtggctgatctgcggaccgcccggttcc
ggccgctcgaatgttgcgcgcgcgttcgcggccgcgctggaaagccctgacaggggtctt
tccgacgagccgaccaatataacccgtcaggtgctgtccggcactcatcccgacgtgacc
acgttggccaccaacaaggtcaccatcggcatcgatgacgtgcgccagctgatcctcacc
tccgaacagatgcccagcacggcgccgtggcggatcatcatcatcgaagacgttgaccgc
atgctggaacgcaccacgaacgtgctgctcaaggagatcgaggagcccagcccgcacacc
atatggctgctgtgcgcccccagcgcgcaggatgtgctgccgaccatccgctcgcgtacc
cgcatcgtcaaccttgccgtgccgtccacgaaagcggtcgcggattacctgatggcatcc
gtcaatccggcgctgccggcggaacgccaattcgaccgtcatgtggcggtgcgcgcggcg
cggctcgccgaagggcatatcggcatagcgaaactgtacgcctccgacacgcaggtcatg
tcggaccgggacgagctcatcgtcgggctgctgggactgcgcaaggcatcggatgcggtg
ctgctggccgatgatctcatcgacaccgccaaaagccaggcggaagccgacgtgaaccgg
cagacggccgccgccgaagcggatttccgccgcatcaacggcctcggcgagcaggaccgc
atcccgccgaagctgcgcggcgcctacaacgccatcgccaagaaggacgagatcaagcgg
caggccacgcgccggagccgcgacgtgcttgaccgcgcgctcaactcggccgccagcatc
taccgcgacatagcggtgctgcagaacaacgccgaggacgcagtcgggctgatcaacatg
gagaaccgcacggccatcgccgagctgtcggcacggctgagccgtcaggaagtggtcgat
cggttggaggccatcgccgtggccaggaagcggttgctgggcaacggcaacccgatgctg
gtgttcgaggcgctgttctgcgcgttgattccggggaggctatga
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