Bifidobacterium bifidum S17: BBIF_1679
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Entry
BBIF_1679 CDS
T01328
Symbol
topA
Name
(GenBank) topA DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbi
Bifidobacterium bifidum S17
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbi03032
]
BBIF_1679 (topA)
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_1679 (topA)
Enzymes [BR:
bbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BBIF_1679 (topA)
DNA replication proteins [BR:
bbi03032
]
Prokaryotic type
DNA Topoisomerases
BBIF_1679 (topA)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBIF_1679 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
HC2
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ADO53884
LinkDB
All DBs
Position
complement(2025970..2028888)
Genome browser
AA seq
972 aa
AA seq
DB search
MGTGNKLVIVESPTKAKKIGGYLGSGYTVMASVGHIRDLAQPSQIPADDKARFGKFGVDV
DDGFKPYYIVDGDKKKTVAELKKALKNSDELYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITKDAIKASLGNTRNVDEDMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRASYWDVTAVLGATDAEGEPASFESRMVSLGGKRLAGSKDF
SDDGKLAPSGFADNVCQLDEAHANALAKLLADATFTVASMETKPYRRRPFPPFTTSTLQQ
TAGNRLSMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAARDAVEYHFGKSFLSDG
PKQYVTKTASAQEAHECIRPAGARFHDPAELSGKVPADQLKLYTLIWQRTLASQMADATG
STATVRLSAPAGEDGEAMFQASGTVIEFPGFMKATGEGRRAAAPAASSMGAGDGEAAAKR
ASRETDDNGSLPPMQTGDRLAASSVEADGHETQPPARYTEASLVKTLEAKEIGRPSTYAS
IISTIIDRGYVYERGRALIPSWLAFSVIKLLETKFPKYVDYQFTADMENGLDQIAHGQET
GRDWLTHFYFGSGGDAATSADEAHAGLQQQVAQLGEIDARAINTIDIGDGLHVRVGRYGP
YLEDMNHVDAAGNPKRASLPDTMAPDELTVQVGHELIDSNAGGPRELGVDPASGGTVEVR
NGRFGPYVALVPLETDGGSSETKSKKITVPKPKMASLFKTMSPESITLDDALKLLSLPRT
VGVYEEANTETGELGEVTVEANNGRYGPYLTKTGADGKSETRSLASEDEIFTVDVDKAKE
LFAQPKYGRGRGRGTAKPPLRELGPDPETGKNVTIKDGFYGAYITDGETNRTVPKQYTAE
SIEPAEAFRLLAEKRAAGPSKRGRRKTTGAAAKKTAAKKSSTASATKKTAAAKKTAAKKT
TARKTAAKKTVE
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggcaacaagcttgtcatcgtggagtctcccaccaaagcgaagaaaatcggt
gggtatcttggcagcggctacaccgtcatggcatcggtcggtcacatccgtgaccttgca
cagcccagtcagattcccgcggacgacaaggccaggttcggcaagttcggcgtggacgtc
gacgatggcttcaaaccgtactacatcgtcgacggtgacaagaagaagaccgtcgccgaa
ctgaaaaaagcgctgaagaactccgacgagctctacctcgccactgatgaggatcgcgaa
ggggaggcgatcgcctggcacctggtgcagacgctcaagccgaaggttcccgtcaagcgc
atggtgttccacgagatcaccaaggacgccatcaaggcgtcgctgggcaacacccgcaac
gtggacgaggacatggtggacgcgcaggagacccgccgcatcctcgaccgcctctatggc
tacgagctgtcgcccgtgctgtggcgcaaggtgggccccggattgtcggccggccgcgtc
cagtccgtcgccacacgcctgatcgtcgagcgtgagcgcgagcgcatggcgttcgtgcgc
gcctcctactgggacgtgaccgcggtgctgggcgcgacggacgcggagggcgagccggcg
tcgttcgaatcgcgcatggtgtcgcttggaggcaagcgacttgcgggttccaaggatttt
tcggatgacggcaagctcgcgccgtccggtttcgctgacaacgtatgccagctggatgag
gcccatgcgaacgccctcgccaagctcctggccgacgcgaccttcaccgtggcatcgatg
gagaccaagccgtaccgtcgccgcccgttcccgccgttcaccacatccacgctgcagcag
acggccggcaaccgcctgtccatgagctcgcgtcagaccatgcgtgccgcgcaggggctg
tacgagaacggttacatcacgtatatgcgaaccgattcggtgaccttgtcgcaggaggcc
atcgccgccgcccgtgatgccgtcgaatatcatttcggaaagtcgttcctgtccgatggg
cccaagcagtatgtgacgaagaccgctagtgcgcaggaggcccacgaatgcatccgaccc
gccggcgcgcggttccatgacccggcggagctctccggcaaggtgcccgccgaccagctg
aaactgtacacgctgatctggcagcgcacgctcgcttcccagatggccgacgccaccggc
tccaccgcgaccgtgcgtctgtcggctcctgccggcgaggacggcgaggcgatgttccag
gcgtccggcacggtgatcgagttccccggattcatgaaggccaccggggagggccgtcgt
gcggcggcccccgctgcctcctcgatgggcgccggtgacggcgaggccgcggcgaaacgc
gcctcgcgcgaaaccgacgacaacggatcgctgccgccgatgcagaccggtgaccgtctc
gccgcgtcctcggtggaggctgacgggcacgagacccagccgccggcgcgatacaccgaa
gcgtcgctggtgaagacgctggaggccaaggaaatcggccgtccttcaacctatgcgagc
atcatctccaccatcatcgaccgtggatacgtctacgagcgcggtcgcgccctgattcca
tcgtggctggcgttctcggtcatcaagctgctggagacgaaattccccaagtacgtcgat
taccagttcaccgcggatatggagaacgggctcgaccagatcgcgcacggtcaggagacc
ggccgtgactggctgacccatttctatttcggttccggcggcgacgcggcgacttcggcg
gacgaagcgcacgcgggcctgcagcagcaggtcgcgcagctgggggagatcgacgcccgc
gccatcaacaccatcgacatcggcgacggactgcacgtgcgcgtcggtcggtacggcccg
tatctcgaagacatgaaccacgtggatgcggcgggcaaccccaagcgggcctccctgccc
gacaccatggcgcccgacgagctgaccgtgcaggtcggccatgagctcatcgacagcaat
gccggtggcccgcgcgagctgggcgtcgacccggcaagcggcggcacggtcgaagtgcgc
aacggccggttcggcccgtatgtggccttggtgccgctcgagacggacggcgggtcatcc
gagacgaagtccaagaagatcactgtgcccaagcccaagatggcgtccctgttcaagacg
atgagccccgaatcgatcacgctggatgatgcgctgaaactgttgtcgctgccgcgcacc
gtgggcgtttacgaggaggccaacaccgagaccggcgaacttggcgaggtcacggtcgag
gcgaacaacggccggtacggcccctacctgaccaagaccggagccgacggcaagtccgag
acgcggtctctcgcctcggaggatgagatcttcactgtggacgtcgacaaggcgaaggaa
ctgttcgcccagccgaaatacggacgcggccgtggacgcggcaccgcgaagccgccgctg
cgcgagctcggccccgatcccgaaaccggcaagaacgtgaccatcaaggatggcttctac
ggcgcctacatcaccgacggcgaaacgaaccggaccgtgcccaagcagtacacggccgag
tccatcgagccggccgaggcgttccgcctgctggccgagaagcgtgccgccggcccgtcc
aagcgcgggcgtcgcaagacgacgggcgccgccgcgaagaagaccgccgcgaagaagagc
tccacggcatctgccaccaagaagacggccgccgcgaaaaagacggccgccaagaagacc
acggccaggaagaccgcagcgaagaagaccgtcgagtag
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