Bombus bifarius (two-form bumblebee): 117204144
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Entry
117204144 CDS
T07537
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
bbif
Bombus bifarius (two-form bumblebee)
Pathway
bbif04512
ECM-receptor interaction
bbif04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
bbif00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117204144
04518 Integrin signaling
117204144
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bbif00536
]
117204144
Glycosaminoglycan binding proteins [BR:
bbif00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117204144
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
117204144
NCBI-ProteinID:
XP_033297171
UniProt:
A0A6P8LAR4
LinkDB
All DBs
Position
Unknown
AA seq
1508 aa
AA seq
DB search
MGPKALRLAAAFAVIQLLLPQVHSIRTKLRKQRSKPLQAQQAANGEYDYDYYEGYDDYDD
RNETTTTTAPSPPVTSSVNTASRGELPTETLQTFYRPGLSTDVPTQATIRTFSQVGILPN
EVQTTPEQNHASPTEIVPGESNVISAVAVPGPRGEPGRPGDMGRPGDAGFPGHPGSPGIP
GPPGPPGPIPDVSMYYQQLALSQANQDKGPTGAAAPLYGPEAYLQMQTGPIGPRGPSGPP
GPPGPQGFQGVRGEPGEPGTLGPPGAPGPRGLAGLPGKDGNTGEDGEPGPPGSVGPVGPR
GLPGMPGLPGVKGHRGFPGLDGAKGEQGVSGEKGSMGVPGPMGHVGPMGPAGPRGERGRE
GPPGPPGIRGVDGIAGPPGQPGTVGKPGSPGFPGSPGVKGDQGAQGPKGSQGIQGPRGET
GRPGQPGESGPQGPQGKDGIPGEKGSTGAAGLVGAPGFPGARGQPGIPGNPGVPGAKGMP
GLSGERGFKGDSGAKGDSGTPGPRGLPGPPGNEGKRGKRGMRGPIGTSGPAGERGAPGAP
GLPGPDGPMGPKGQSGDRGPIGPMGLRGANGDPGRPGSPGLQGTRGLMGRPGAPGKPGNP
GDRGIQGADGKPGEQGPAGLQGLPGPIGLPGEKGYPGEPGKAGEPGNPGPPGPRGDTGKE
GAPGPQGSPGPSGVDGERGPPGSPGPRGFQGFPGVTGNPGTPGKDGESGVQGPPGPPGIP
GNRGERGFPGERGTPGGPGLTGPRGEPGAQGLDGPPGLPGAKGDRGISGPPGLVGLPGLR
GATGESGPKGERGSSGPPGPEGPSGRIGERGPQGQIGSPGPPGESAERGDPGLPGPPGEV
GAPGNPGERGPQGLQGLQGFPGPQGLIGLPGLKGDRGYPGLKGDQGNPGLPGSPGETGPQ
GLVGLTGAKGVRGEPGARGEPGIMGPPGVPGIVGATGPPGAIGPSGPPGLPGSKGNIGET
GRAGNPGPIGNPGSPGADGNKGESGSQGPPGTPGPQGPQGSPGERGLPGLPGPSGPIGAR
GIRGAPGESGVPGKPGPEGPPGPPGQVGPIGPHGPSGEIGAEGPSGKPGPPGIAGRPGDK
GPPGAVGQTGLPGSPGLPGPPGQAGAPGSTGERGPKGETGPQGVEGQQGPRGKPGPIGLE
GPKGDRGEEGQKGAKGHRGFTGLQGLPGPTGLPGEKGIPGLPGLPGKDGESGPRGSPGRD
GSPGPIGLTGNPGPKGPSGEEGRHGPPGPPGPPGPPGPPGELGLGYDAASLAALLGQGQT
KGPDPLVGDEPPRMFSQDMTEEERKELILKAYKQLKSSFQKFVKPDGGKSSPAKTCRDLY
TAYPDKLSGEYWIDPNEGDTRDAILVYCDAKKRATCLLPNPVRSPEINYITDQPETWLSE
IENGMKITYKADSNQIGFLQLLSRHAYQNIIYHCKNSIGYFDSERKTYRKGMKFLTWNDV
ELTPRGNQRLRYEMITDECRTYNGQWGKTVISYETDKPVRLPIIDVALRDIGKPDQSFSI
EIGTVCYE
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggggccgaaggcccttcggttagccgcggcgttcgccgtcatccaacttcttttgccg
caggttcattccatacggaccaaactcaggaaacaacggtccaagccgctgcaagctcaa
caagccgccaatggtgaatacgattacgactattacgagggttacgatgactacgatgat
agaaatgaaactacaactacaactgcgccatcaccacctgttacgtccagtgttaatact
gcaagcaggggtgaattaccgacagagacattacaaactttctacagacctggactgtct
acagatgtaccaacgcaagcgacaattcgaactttcagtcaagtcggtatattaccaaac
gaagtgcaaacaacaccagaacaaaatcatgcatcaccgacagagattgttcctggtgaa
agtaacgtgattagcgcggttgctgttcctggacccaggggcgagcctggtcgacctgga
gatatgggtcgtccgggagatgctggatttccaggacaccctggatctccgggaattccg
ggacctccggggccaccagggcctatacctgacgtatcaatgtattatcaacaattagct
ttatctcaagcaaatcaagataaaggaccgacgggagcagcagcacctttgtatggtcca
gaagcctacttacaaatgcaaactggtcctattggaccgcgtggtccatcaggtccacct
ggaccacctggaccacagggttttcaaggagtacgaggagaacctggtgaacctggaact
ttgggtcctccaggagcgccaggtcccagaggattagctggtttaccgggaaaggatggt
aataccggtgaagatggagaacctggtcctccaggatcggttggtccagtcggaccaaga
ggtctaccagggatgcctggtcttcctggtgtaaaaggacaccgaggttttccagggtta
gatggtgcaaaaggggaacaaggtgtatctggtgagaaaggatccatgggcgtacctgga
ccgatgggacatgtaggcccgatgggccctgcaggtccacgtggtgaaagaggtagagaa
ggtcctcctggacctccaggaattagaggagtggatggtattgctgggccccctggtcaa
cctggtacggtaggtaaaccaggttctcctggatttccaggtagtccaggtgtaaaagga
gatcaaggagcacaaggaccaaaaggaagccaaggcatacaaggccctcgaggtgaaact
ggtcgtcctggtcaacctggtgaatcaggaccgcagggtccccagggaaaagatggaata
cctggagaaaagggaagtacaggagcagctggtttagttggtgctccaggtttccctgga
gctcgcggacaacctggaatacctggcaatcctggtgttccaggagcgaagggcatgcct
ggactttcaggtgaaagaggattcaaaggagatagtggagctaaaggtgattcaggaact
ccaggaccacgtggtttgcctggtcctcctgggaacgagggtaaacgaggaaaaagagga
atgcgcggaccaattggtacatccggtcctgccggagaacgtggagcaccaggcgcacca
ggtcttccgggacctgatggccccatgggacccaaaggtcagtctggagatcgtggacca
attggaccaatggggctcagaggagctaacggagatcctgggcgaccaggatctcccggt
ttacagggcacacgtggtttaatgggtcgccctggtgctccggggaaaccaggaaaccca
ggagaccgaggaattcaaggtgctgatggaaaaccaggtgaacaaggtccagctggatta
caaggtttacctggtccaataggtctcccaggagaaaagggatatccgggtgaaccagga
aaagctggtgagccgggaaatcctggaccacctggacctagaggtgatacgggaaaagaa
ggagcaccaggacctcaaggttcacctggaccatcaggagtagatggtgaacggggacct
ccaggatctccaggtcctagaggttttcagggtttcccaggcgttactggtaatccagga
acaccaggaaaagatggagaatcaggtgttcaaggaccacctggtccaccaggtatacct
ggaaatagaggtgaacgaggatttcctggtgaaagaggtacaccaggaggaccaggatta
acaggaccaagaggagaaccaggtgcacaaggattagatggacctcccggattacctgga
gcaaaaggagatcgaggaatttcaggaccacctggattagtaggattgcctggcttacga
ggagctacgggagagtcaggcccgaaaggagaaagaggatctagcggaccgcctggccct
gaaggaccttcaggacggattggagagcgtggcccacaaggtcaaattggttcaccggga
ccgccaggtgaatcagcagaacgaggcgatcctggattacctggacctccaggagaggta
ggtgctcctggcaatccaggagaaagaggaccccaaggattacaaggactgcaaggcttc
ccaggaccacaaggactcattggtttaccaggattaaagggtgaccgtggttatccaggt
ttaaaaggagatcaaggaaatcctggtctacctggtagcccaggtgaaactggaccacaa
ggtctagttggtttgacgggagctaaaggagtacgaggagaaccaggtgctagaggagag
cctggtattatgggaccaccaggagtaccaggaatcgttggtgcaacgggcccgccaggc
gcaataggaccatcaggaccgcctgggttaccaggtagtaaaggtaatattggggaaaca
ggacgagccggaaatcctgggcctattgggaatccaggttcacctggtgcagatggaaat
aaaggcgagagtggttctcaaggaccaccaggtactcctggtcctcagggtcctcaaggc
tctcctggcgaaagaggattacctggtttaccaggtccgtctggaccaataggcgctaga
ggaatacgaggagcacctggtgaatccggtgtacctgggaaacctggaccagaaggtcca
cctggacctcctggacaagttggaccaattggaccacatggaccatcaggagaaattgga
gcagaagggcccagtggtaaacctggaccacctggaatagcaggtcgtcctggagataaa
ggaccaccgggagcggtaggacaaacgggattacccggatctcctggtttacccggacca
cctggtcaagcaggtgctccaggatcaactggagaaagaggaccaaagggcgaaacagga
ccacaaggtgtagaaggacagcaaggacctagagggaaaccaggacctataggattggaa
ggtcctaaaggtgatcgcggagaagaaggccagaagggtgcgaaaggccatcgaggattt
actggtttacaaggtttacccgggcctactggtctaccaggggagaaaggaatacctgga
cttcctggtctacctggaaaagatggcgaatctggacctagaggtagtcctggacgagat
ggcagccctgggccaattggattaactggcaatccaggaccaaaaggtccttcaggtgaa
gaaggtcgccatggaccaccaggtcctcctggtcctccagggcctccaggtccacccggt
gaacttggattaggatatgatgctgcttctttagctgcacttttaggacaaggtcaaact
aaaggaccagatccattagttggtgatgaaccacctagaatgtttagtcaagacatgaca
gaagaagaaaggaaagaactcattttgaaggcatataaacaattgaaatcatcattccag
aaatttgtaaaaccagatggtggaaaaagttcaccagccaaaacttgcagggacctttat
actgcatatccagataaactttctggagaatattggattgatcctaacgaaggtgataca
agagatgcaattttagtgtattgtgatgctaagaaacgtgcaacatgtttattgcctaat
cctgtacgttccccagaaattaactatattactgatcaaccagaaacttggttaagcgaa
atagaaaatggaatgaagattacatataaagcagacagtaatcaaattggctttttgcaa
cttctatcgagacatgcataccaaaatataatatatcactgtaaaaatagcataggctat
tttgattctgaacgaaagacatatagaaaaggtatgaaatttttaacctggaatgatgta
gaattaacaccacgtggaaatcaacgtctaagatatgaaatgataactgatgaatgtaga
acatataatggacaatggggtaaaacagtaatttcatatgaaactgataagcctgtaaga
ctacctataatagatgtggccttacgagatattggaaaaccagatcaaagcttttctatt
gaaatcggtactgtttgttatgaataa
DBGET
integrated database retrieval system
