Bombus bifarius (two-form bumblebee): 117205889
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Entry
117205889 CDS
T07537
Name
(RefSeq) uncharacterized protein LOC117205889
KO
K03679
exosome complex component RRP4
Organism
bbif
Bombus bifarius (two-form bumblebee)
Pathway
bbif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117205889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbif03019
]
117205889
Messenger RNA biogenesis [BR:
bbif03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117205889
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
117205889
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
EF-hand_1
KH_6
ECR1_N
EF-hand_7
EF-hand_6
EF-hand_5
EF-hand_8
EH
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
117205889
NCBI-ProteinID:
XP_033300604
UniProt:
A0A6P8LQJ1
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MMEEYPPINVRLAVNRVDLNIIKNEDIQPRIYTPGEEISSQPDFLRGHGTYVDDENTLRA
SVAGVLEKVNKLISIRPLKARYQGEIGDVVVGRITEVQQKRWKVDTNSKLDSVLLLSSVN
LPGGELRRRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKV
SPALIKRKKTHFHNLANGASLILGNNGYIWIGASKKDTDRSEGGFTQDLSRIPQVNREVC
ARLRNCILILAQCNIQLTDTSVTYAYEESMKYKVNELLEPESHQRNMDACFTAFDKDGDG
YLSITEFEFICRALFRNDRGKIYNVDENQLKEMYSIFDLNGDGKIDREEFEICWNRWIKT
CTRPKSAFLIVDVQNDFITGSLNIKQCAAQHDGSEVIEPINRLLEIVQFDAVFYSLDWHP
MDHVSFIDNLHLRDVDPSSGISKEAAQVYDTITFRGPPLLKQRLWPRHCIQDSWGAELHK
DLKIVDNAIKIYKGTNPEVDSYSVFWDNKKMMETSLSSQLQEKGATDIYICGLAYDVCVG
ATAVDALTNGYRTILIDDCSRGVDLVDIEKTKATVIADNGVIVNSSQVKAMVEGKDRRPE
LGYKLALEIKRKLNFVDDDNQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaatatccacctattaatgtacgtttggcagtaaatagagtcgatttaaat
ataataaagaacgaagacatacaacctcgaatatatacaccaggagaagagatttctagt
cagcctgactttttaagaggacatgggacatacgtggatgatgaaaacacattacgcgca
tctgtagctggcgttttagaaaaagtaaataaacttatttcgataagacctttgaaagca
cgttatcagggtgaaataggagatgtagttgtcggtcgtataaccgaggtacaacagaag
cgatggaaagttgacacaaattccaaacttgattctgtattattgctgtccagtgttaat
ttacctggtggtgaattgaggagaagatctgcagaagatgaacaaactatgagaagatat
ctccaggaaggagatttaatttgtgcagaagtacaaagtacttttgttgatggttcgctc
tcattgcacactagggtcttaaagtatggtaaattgtctcagggtataatgttgaaagta
tcaccggctcttataaagagaaagaaaacccattttcacaatttggcaaatggtgcgagt
ctaatattaggaaataatggttatatatggattggagctagtaagaaagatactgataga
tcagaaggtggtttcacgcaggatttgtcaaggattcctcaagtaaaccgcgaagtttgc
gcacgattacgtaattgtattttaatcttagcacaatgtaatatccaacttacagataca
tctgttacatacgcttatgaagaatctatgaaatataaagtaaatgaattgctggaacca
gagtcacatcaaaggaacatggatgcatgttttactgcatttgataaagatggagatgga
tatttgtcgattacggaatttgaattcatttgtcgtgcactatttcgtaatgatcgtggg
aaaatttacaacgtcgatgaaaatcaattgaaggaaatgtattctatatttgacttgaac
ggagatggaaaaattgacagagaagaattcgagatatgctggaatcgatggattaaaaca
tgcactcgtccaaagagcgcctttttaattgtggatgtacaaaacgatttcataacaggt
tccctaaatattaagcaatgtgctgcccagcatgatggttcagaagtaattgaaccaatt
aatcgtttattagaaattgtacaatttgatgcagtgttttattctcttgattggcaccct
atggatcacgtatcttttattgacaatttacatctaagagatgttgaccctagtagcgga
atctcaaaagaagcagcacaagtttatgatactataacattcagaggtccgccattgtta
aagcaacgactttggccgcgtcattgcattcaagactcttggggtgctgaacttcataaa
gatctgaaaattgtagacaatgcaattaagatatacaaaggaactaatccagaagtagac
tcatattccgttttctgggataataaaaagatgatggaaacaagtctatcttcacaatta
caagaaaagggcgcgacagatatatatatctgtggattagcctatgatgtttgcgtcggg
gctactgcagtagatgcacttacaaacggttatcggactattctcatcgatgactgtagt
cgaggagtagaccttgttgacattgaaaaaactaaagctactgttatagctgataatggc
gtaattgtaaattcaagtcaagtgaaagcaatggtcgaaggaaaagatcgccgaccagaa
cttggatataaattagctttagaaattaaacgaaaattaaattttgtagatgatgataat
caataa
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