KEGG   Bombus bifarius (two-form bumblebee): 117206928
Entry
117206928         CDS       T07537                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
bbif  Bombus bifarius (two-form bumblebee)
Pathway
bbif03030  DNA replication
bbif03410  Base excision repair
bbif03420  Nucleotide excision repair
bbif03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bbif00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117206928
   03410 Base excision repair
    117206928
   03420 Nucleotide excision repair
    117206928
   03430 Mismatch repair
    117206928
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbif03032]
    117206928
   03400 DNA repair and recombination proteins [BR:bbif03400]
    117206928
DNA replication proteins [BR:bbif03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117206928
DNA repair and recombination proteins [BR:bbif03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117206928
SSDB
Motif
Pfam: RFC1 AAA BRCT BRCT_2 Rad17 AAA_22 AAA_14 AAA_30 RuvB_N PTCB-BRCT RNA_helicase AAA_assoc_2 AAA_19 AAA_33 AAA_5 AAA_7 AAA_16 AAA_11
Other DBs
NCBI-GeneID: 117206928
NCBI-ProteinID: XP_033302523
UniProt: A0A6P8M3W4
LinkDB
Position
Unknown
AA seq 1049 aa
MPRDIRSYFQTIKTNSNVAPAKATKKRIIISSDEDEDKSQSPRKRPKKTKLLEKKAIKSD
SNEDIKIISPADMFGKNPVNRQEATKISRQSLKQKAEEVPKISKKLQKKEAEGHNDDDFE
ATLRQLDTSDIEQRYLTEREKVNEDTSLHESSIENKEKTPIKNKEDVKKKTRSDKTNQEK
DNKEHEPKNKKHSNNILDEDIKHKGSENSSKFKHTKKSSKTSSAISKMEVEYLKEKNETS
PKKIDTSDVYEEKIEKKKQNAAMYQQYLQRGGARNPGSKEIPVGAEQCLTGLSFVITGVL
DSLEREEAEELIKQYGGRILHQISKKTDYVIVGDQAGPAKLSKATNLNIKKISEDDLLEL
IRTRPAGQSDNVTQPRTKSKERSKRKFAESSEESTPKKKKITVNEETKKVHSPHETESSK
REIEDSLKQELYNKDEKIKSSIEKKQNEYKESLVQDKKEIIDVKDIKIQMNTLQDISGNI
PVQALVEKYRPKTMKQILGQQGDKSNAKKIHTWLMNWHKNQSGQVKHTRPSPWAKDDNGA
FFKAALLSGPPGIGKTTTVQVVCNELGFDLIEFNASDTRSKKLLQEEVSELLSNTTIKNY
FKDVKSKPSSKHVLLMDEVDGMAGNEDRGGLQELITLIKSTDVPIVCICNDRNNPKMRTL
SNYTFDLRFPKPRLEQIRGAMKSMCFKENIQISNEDLDRLIESTNQDIRQVINHLALFVG
QTGSQEKNEKKHINKDLRLGPWDVVKKVFSVEEHKHMSISDKSNLFFHDYNIAPLFVQEN
YLMVIPQVPKNELLGRVAESAESIALGDVVEKSIRSNNAWSLLPIQAYYSSVIPGTAMSG
HIGGQINFPAWLGRNSKTGKLNRLMQEITLHARLATGASKEAINLDYIRPLRNTILRPLA
VGGIENVDTAIDVMNHYHLLREDLDSLVEISLWPGDRDPFQIIDSKVKAAFTRAYNKSSV
ALPYIVSGTSKKKVTSSIQEEGFLEEEEEEIDSDQNDDNLDADKMIKAKKAGINKNTESK
GKSTDKTEKKGKNSSDKSNKRGRGRGKAK
NT seq 3150 nt   +upstreamnt  +downstreamnt
atgccaagggatatacgatcctattttcaaactattaaaacaaattccaatgttgctcca
gcgaaagctaccaaaaaacgaattattatttcgtctgacgaagatgaggacaaatctcaa
tcgccacgtaaacggcccaagaagacaaagttattggagaagaaagctattaaatctgat
tccaatgaagatattaaaatcatttctcctgctgatatgtttggtaaaaatccagtaaac
agacaagaagcaactaagatatctagacagtcattaaagcagaaagctgaagaagtacct
aagatatctaaaaagttacaaaagaaggaggctgaaggtcataatgatgatgattttgaa
gctaccttacgtcagttagatacatctgatattgagcagagatatttaacagagagagag
aaagttaatgaagatacaagtttacatgaaagcagtattgaaaataaagaaaagacaccc
attaaaaataaagaggatgttaaaaagaaaacaagatctgataaaacaaatcaagaaaag
gataataaagaacatgaaccaaagaataaaaaacattctaataatattttagacgaggac
attaagcataaggggtctgaaaatagtagcaaatttaaacatacaaagaaatcttctaaa
acttcatctgctatttctaagatggaagtagaatatctgaaagaaaaaaacgaaacttct
cccaaaaagatagacacttctgatgtatatgaggaaaagattgaaaagaaaaaacaaaat
gctgcaatgtatcagcaatatcttcaaagaggaggagccagaaatccaggctcaaaagaa
attcctgttggtgctgaacagtgtctaacaggattaagttttgtaataactggcgttttg
gattctttagaaagagaagaagctgaagaacttattaaacaatatggtggacgaatttta
caccaaatttcaaagaagactgactatgttatagtaggtgaccaagctggtcctgcaaaa
ctgtcaaaggctaccaacttaaacataaaaaaaatatcagaagatgatttgcttgagctg
atacgtacaaggcctgcaggtcaaagtgataatgtaacacaacctcgtacaaaatcaaaa
gaaagatcaaagagaaaatttgcagaatctagcgaagagtcaacaccaaagaagaaaaaa
attactgtaaacgaggaaacgaaaaaagtacattcaccacatgaaaccgaaagtagtaaa
agagaaattgaggactcattaaaacaagaactttataataaggatgaaaaaataaaatct
tcaattgaaaagaaacagaatgaatataaagaatcgcttgtacaggataaaaaagaaata
attgatgtgaaagatataaaaatacaaatgaatactttgcaagatataagtgggaacata
ccagtgcaggcattggttgaaaaatataggccaaaaactatgaaacaaattttggggcaa
caaggggacaaaagtaatgctaagaaaatacacacttggttaatgaattggcataaaaat
caaagtggtcaagtgaaacatacaagacctagtccttgggcaaaagatgataatggagct
tttttcaaagctgctttgttatctggtcctcctggaattgggaaaaccacaactgtccaa
gttgtctgtaatgaattaggttttgatcttatagaatttaatgcatcagataccagaagc
aaaaaacttctgcaagaagaagtatcagaacttttatctaataccacaataaaaaattat
tttaaagatgttaaaagcaaaccatcatcgaaacacgtattgttaatggatgaagtagat
ggaatggctggtaacgaggatcgcggtggtctacaggaattaattactttgatcaaatca
actgatgtacctattgtttgtatttgcaatgatcgaaataatcccaaaatgagaacgctt
tctaattatacatttgaccttcgatttccaaaacctagattggaacaaattaggggtgcg
atgaaatctatgtgttttaaagaaaatattcaaatttcgaatgaagatctcgatcgttta
attgaatcaactaatcaggatattcgtcaagttataaatcatttggcattatttgttgga
caaactggttctcaggaaaaaaatgaaaagaaacatataaataaggatttgagattaggt
ccttgggatgttgtaaaaaaagtattttccgtagaagaacataaacatatgagtataagt
gacaaaagtaacttatttttccatgattacaatatagcaccattatttgtacaagaaaat
tacttgatggttatacctcaagtgccaaaaaatgaattgttaggaagggtagcagaaagt
gctgaaagtatagcattaggagatgtagttgaaaaatccataagaagtaataatgcttgg
tctcttttaccaatacaagcttattattcttctgtaatacctggaacagcaatgtctggt
cacattggtggtcaaattaattttccagcttggcttggacgtaattcaaaaactggtaaa
cttaatcgcttaatgcaggaaatcactttacatgcacgtttggctacgggtgcgagtaag
gaggctataaacttggactacattagacctcttagaaatactattctcagacctttagca
gttggaggtattgaaaatgtagatacagcaattgatgttatgaaccactatcatttactc
agagaagatctagattcattggtagaaatttctctatggcctggtgatcgtgatccgttt
caaattatagatagtaaggtgaaagctgcttttacaagagcatataataaaagttctgtg
gctctaccttatatagtgagtggaacatcaaagaaaaaagtaacatcaagtatacaagaa
gaaggtttcttagaagaggaggaagaagaaattgactctgatcaaaacgacgataacctt
gatgcagataagatgattaaggcaaagaaagctggtataaacaagaatactgaatcaaag
ggtaaaagtactgataaaactgagaagaaaggcaaaaatagtagtgataagtctaataaa
cgtggaagaggacgggggaaagcaaaataa

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