Bombus bifarius (two-form bumblebee): 117210263
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Entry
117210263 CDS
T07537
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bbif
Bombus bifarius (two-form bumblebee)
Pathway
bbif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117210263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbif03019
]
117210263
Enzymes [BR:
bbif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117210263
Messenger RNA biogenesis [BR:
bbif03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117210263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
117210263
NCBI-ProteinID:
XP_033308983
UniProt:
A0A6P8MKZ2
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MNEVLNSNFDAVYPRIENAINNAAFIAIDAEMSGIHSERNLKNSLFDTLNDRYMAWKRNI
QQFVIVQFGITTFYRVPSNNAYKADSFSFYLFPRSIPLKNRQLSWEVEAIDFLYKHGFDF
NKFLVGGISYVDEIDESLLRNHIVHGDVENYLSLLSYDEEENFKECKSKVYEWISNKLEN
APLKLEVITPMVQYVLHKDLRNNYNDIWITSDNKSINVMKISSNAQDDLFKKDNLEEALL
GVYLGFSKVFKLLSSSKKTIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYD
TKFLSFELRKLYSRDEVNWKINSLNILYEYFTTQGRITTYNSPEIIFNEEFSHKKNYHSA
GWDSYFCGYVFVKMAHIFCVKKFGTGLEERTASHSELMSSVKDFINSINVTRGNEMYMKL
DGEDPMLSRPQWLHVKLKSPSLDIKQLMEKFSSYGSVDVMPFARRRVLVAVSSHNTASEI
LQRFKNSEELQVARYNRIKHATSMTIFLWSGAVLSGGVLAWMLKNISKTYINQ
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagttttgaatagcaattttgatgctgtgtatccacggatagagaatgctata
aacaatgcagctttcattgcgatagatgctgaaatgtcaggtatacattcggagagaaat
ttgaaaaatagtttatttgatactctcaatgatcgttacatggcatggaaaagaaacatt
cagcaattcgtaattgtacaatttggcattacaactttttaccgtgttccttctaacaat
gcctataaagcggacagctttagtttttacttgtttcctagatctattccattaaaaaat
agacaattgtcgtgggaagtggaagcgatagatttcctttataaacatggcttcgatttt
aataaattcttagtcggaggtatttcgtacgttgacgaaatagatgagagtttactgcgt
aatcacatagtacatggcgatgtagaaaattatttatcactgttatcctacgacgaagaa
gaaaatttcaaagagtgcaagagcaaggtttatgaatggatttctaataagttagaaaat
gcaccattaaagttggaagttattactcctatggtacaatatgtattacacaaagactta
agaaataattacaacgatatttggattacatcagacaataaatcaataaatgttatgaaa
atatcgagtaatgcgcaggatgatttgttcaagaaggataatttggaagaagcactgcta
ggtgtttatttaggtttttccaaagtatttaaacttttgtcctctagtaagaaaacgata
atagggcacaatatacttttggatttaatgttcatgcatcaacagttctataagccacta
ccagattcatacaaagaattcaaaagtaatatacatacattatttccacaaatatatgac
acaaaattcttaagctttgaattgcgaaaattatatagcagagatgaagtaaactggaaa
ataaattcattgaatattttgtacgaatattttacaactcaaggacgaattacaacttat
aattcaccagagattatctttaatgaagaattttcacataaaaagaattatcatagcgct
gggtgggattcttacttttgtggatatgtatttgtgaaaatggcacatatattttgtgta
aagaaatttgggacgggtttagaagaaaggacagcgtcccattctgagttaatgagcagt
gtaaaagattttataaattctataaatgtaacgagaggcaatgaaatgtatatgaaactt
gatggagaagatccaatgttatcgagaccacaatggcttcatgtcaagttgaagtcacca
tctctagatattaagcagttaatggagaaattctcatcttatggttcagtggatgtaatg
ccttttgctcggagacgcgttttagtagctgtctcaagccacaataccgcgtcggagata
ttgcagcgattcaagaacagcgaggaattacaggtggcacggtacaaccgcataaaacac
gcgacgtccatgaccatttttttgtggagcggagctgttctgtccggaggtgttcttgcc
tggatgttaaaaaatatttctaaaacgtatatcaatcaataa
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