Bombus bifarius (two-form bumblebee): 117211344
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Entry
117211344 CDS
T07537
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
bbif
Bombus bifarius (two-form bumblebee)
Pathway
bbif03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbif00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117211344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbif03021
]
117211344
03019 Messenger RNA biogenesis [BR:
bbif03019
]
117211344
Transcription machinery [BR:
bbif03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117211344
Messenger RNA biogenesis [BR:
bbif03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117211344
U7-dependent histone pre-mRNA processing factors
117211344
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
UBA_Crd2
Motif
Other DBs
NCBI-GeneID:
117211344
NCBI-ProteinID:
XP_033310996
UniProt:
A0A6P8MB80
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MDPRIHRRTEPEKGPGDLIVEWLNEASLNPGEDIKVANLCKVQEILINKEPQLLPLYLDE
ALQFSLDRNAEVRKTVTGFIEEAGVKQPEVIPRVVQVLLRLVSDESSAVAKRALRASGRI
LRAALKWISSAITVTPEMEVAWNQLSALKIQIINMIDSDNDGIRTQAVKFLEGVVLIQTY
PDPDIPKKSDDFSLEDIPLTLKIARRRKLEEEANDVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKTRPQFMPGVIQALQRLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPASIEFAS
TIAKQLTQLGAKEQEILKAYPKPEDIRRMKKRQQEAAASSAAKRVKIETSLIPDESEIVA
SLVPSSKVPELVELSESFIAERLSVDIVTDLVMDSMAWVPDTMTTIFQREYQPSSTTDIN
IQRQTIAKLLATQIRQAKTKKKKDAKDEDAVMEDLVKNPTISVAEAKRERKREKDREKEK
EAKASLEAHEKSLAKARTRLKALKLSEVTKPLSKEIKERMLLMAVNRILLSEKTAVFGGV
AAIRSKILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLCT
KPQEAPHQAYNFLLCTLVSAIDLVQGKDRDTLLYRLYLEAPLITEDAVEALKMVSSDETR
GLMPLQLLKEMVIRRPTKQLVFLNVLLCHTGHENNTIREAAIQLVCQLYSRPELSKLIEE
YAVLYLGFLRLHTPPEIVFGQDRGRPQVETQWTESTTRACLGLYLALLSEHQDLIHELAR
VYTSMGADVKRMVLRLVEGPVRSLGMGSPQLLSLVENCPKGAETLVTRIIHILTEKSAPS
VELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTHN
NESGVPHTSPITPAELLIALHNIDPSKAELKTVIKATSLCFAEKQIYTQETVAVVMQHLM
EMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQS
FAVILQLPPAQLAEALKMASNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKSPCDIHDE
FDIAPPGDYPIEQKPDTMETDISEPAPPGLD
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggatcctcgaatacatagaagaacagagccggaaaaaggaccaggcgatttgatagtt
gaatggttaaatgaggcttcactaaacccaggggaagatataaaagttgcaaatttatgt
aaagttcaggaaatattaataaacaaggagccacaattacttccattatatttggatgaa
gcattacagttttctttagataggaatgcagaagttaggaaaacagttacaggtttcata
gaagaggctggtgtaaaacaacctgaggtaattccacgtgtagttcaggtacttttaaga
ctagtttctgatgaatcatcagctgttgctaaaagagctcttagagctagtggcagaata
ttaagagctgcattgaaatggatatctagcgccattacagttacgccagaaatggaagtt
gcatggaatcaacttagtgctctcaaaattcaaattataaatatgattgacagtgacaat
gatgggattagaacacaagctgtgaaatttcttgaaggtgttgttttgatacaaacatac
cctgacccagatataccaaaaaagtcggatgatttttctttagaagatattccattaaca
ttaaaaatagcacgcaggcgcaaattagaggaagaagctaatgatgtaatggacttatta
atcaaatttcatggatctccacacgttagtagcgttaatttgatgacatgcatgggatct
ttagcattgattgctaaaacaagacctcagtttatgcctggtgtaatacaagctttgcaa
aggttacaacatgatttaccacccacattatctgattctcaagtaaccagtgttcaaaaa
caattaaaattaactctattaggactgatgaagcacccagctagcatagaatttgcatcc
acaatagctaaacaactgactcaattgggagcaaaagaacaagaaattcttaaagcttat
ccaaaaccagaagatattcgacgtatgaagaaacgacaacaagaagcagcagcgtcttcc
gctgcaaagcgtgttaaaatcgaaacttctttaataccagatgaatcagaaattgtggct
agtttagtacccagctcaaaagtaccagaactggttgaactttcagaaagttttattgct
gaaagattaagtgtagacattgttacagatttagtaatggatagcatggcgtgggtccca
gacacaatgacaacgatttttcaaagagaatatcagccttcttcaacgaccgatataaat
attcaacgacaaacgattgctaaattactagcgacacaaataaggcaagctaaaacaaag
aaaaaaaaggatgcaaaggatgaagatgctgtgatggaagatttagtaaaaaatccaacc
attagcgtagcggaagcaaaacgagagcggaaacgtgaaaaagatagggaaaaagaaaaa
gaagcaaaggcatctctggaagcacatgaaaaatcgcttgcgaaggcaagaactcgttta
aaagccttgaaattatctgaagttacaaaaccattgtcaaaagaaattaaagaaagaatg
ttactgatggctgtgaatcgaattttactttctgagaagacagctgtatttggtggtgta
gcagccataagatcaaaaattttaactactctagcagcaacgtttaatccatatattaaa
gaagcagtattacgttatattactgacgatatgagaaatcgtttagatttagctttaggt
tggttgtatgaagaatatgcattacttcagggtttccaaagacgaactacattatgtaca
aagccccaagaagctccgcatcaggcttacaattttttattatgtactttagtatctgca
atagatttagttcaaggcaaagatcgtgacacattactatataggctatacttggaagct
ccattaatcaccgaagatgcagttgaggctttgaaaatggtgtcttctgatgaaacaaga
ggactgatgccgttacaattattaaaagaaatggttattcgtagaccaacaaaacaatta
gttttcctaaacgtattgttatgtcatactggccacgaaaacaatacaataagggaagcc
gctatacagttagtttgtcaactatatagtcgtcctgaattaagtaaactcatagaagag
tatgcagttctctatttaggtttcttacggctacatacaccacctgagatcgtcttcgga
caggatcgaggtagaccgcaagtagaaactcagtggactgagtcaactacaagagcttgt
cttggattatatcttgctctgttaagtgaacatcaagatttaattcatgaattggctaga
gtttatacatcgatgggtgcagatgtaaaacgtatggttcttcgactagtagaaggacct
gtaagatctttaggaatggggagtccacaattattgtcattagttgaaaattgccctaaa
ggcgctgaaacactagttacaagaattattcatatccttacagaaaaatctgcaccgagt
gtagaattagtagcaagagtacgagaactttatcagaccagagtttcagatgttcgattc
ttaataccagttctaaatggtttaacgaaaaaagaagttatagctgctcttccaaaactc
ataaaattaaatcctattgttgttaaagaggtattcaatagactgttaggcactcataat
aatgaaagtggtgtacctcatacatctcctattacacctgctgaattgttaatagctttg
cataatatagatccaagcaaagcagaattgaaaacagttataaaagctacgtccctatgt
tttgcggaaaaacaaatatatacacaagaaactgtagctgttgtaatgcaacatcttatg
gagatgacccctcttcctacattactcatgcgtacagtgatacaaagtttagcattatat
cctaggttaagtggattcgttatgaatatacttcaacgattaattctcaaacaagtttgg
aaacagccaaaagtatgggagggttttgtaaaatgttgtgaacgtacgcaaccacaaagt
tttgcggttattttacaacttcctccagcacaattggccgaagcgttaaaaatggcgagt
aacttacgagcaccattattagcgcatgtcgaagcctttgccgaaaatcagaaagcgcac
attccgcaatcaataatggatgttattcagggtaaatcaccttgcgacatacatgatgaa
tttgatattgcaccacccggtgattatccgatcgaacaaaaaccagatactatggaaact
gatatttcagaaccagctccgcctggtttagactag
DBGET
integrated database retrieval system
