Bombus bifarius (two-form bumblebee): 117213905
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Entry
117213905 CDS
T07537
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bbif
Bombus bifarius (two-form bumblebee)
Pathway
bbif03013
Nucleocytoplasmic transport
bbif03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbif00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117213905
03015 mRNA surveillance pathway
117213905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbif03019
]
117213905
Enzymes [BR:
bbif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117213905
5.6.2.5 RNA 5'-3' helicase
117213905
Messenger RNA biogenesis [BR:
bbif03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117213905
mRNA cycle factors
Common to processing body (P body) and stress granule
117213905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
ATPase
NPHP3_N
SRP54
nSTAND3
AAA_22
AAA_16
nSTAND_NTPase5
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
117213905
NCBI-ProteinID:
XP_033315485
UniProt:
A0A6P8NM00
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQPNQ
PVQVNGTSGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDHEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTALSK
NKQGPRMGKLSQSEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcatacggacccagcagtcagactctgacgtttctagacaccgaagaa
actgatttaattggtgcagatacacagggtagcgaattcgacttcactgatttcacgtta
ccctcaccgagtcaaactcaggcctcgcaacacgatgctgcccaaagtcaacctaaccaa
cccgtacaggttaatggaacaagtggcagctcatctttggagttgaagatatctggagca
gcacaaagtcttgcggaattgcagtttgaagaagaagaagaggaggcatattacaatcgt
gatttgccagaacatgcatgtaaatattgtggtattcatgaagcatcttgtgttgttatg
tgcaatgtttgccgcaagtggttctgtaacggacgtggaaatacatctggttctcacatt
atcaaccaccttgtcagagctaaacataaggaagttactttacacagagatggtcctttg
ggggaaactgtccttgagtgttactcttgtgctgttaggaatgtcttcgttcttggcttc
attcctgcaaaagcagattctgttgttgtattactctgccgccaaccatgtgcagctcag
agttcattgaaggatatgaattgggatcacgaacaatggaagccattgatagaagaccga
tcctttttagcttggttagttaaaattccatcagaacaggaacaattacgtgccagacaa
atttcggcccaacaaatcaataagttagaggaattatggcgagacaatgttgacgcgacc
tttcaagatcttgagaaacccggtgtagatgaagaaccgcaacaagtacttttgcggtac
gaagatggataccagtatcagaacatatttggccctctcgtaaaattagaagccgattat
gataaacgtttaaaggaatctcaaacgcaagaaaacatcgaagtacgttgggatgttgga
ctaaacaagaagacaatcgcctatttcatgttagcaaaaacagacggcgatatgaaattg
atgcacggtgatgaactaagacttcgctacttgggtgaacttcacaagccttggtctgga
attggacatgtaatcaagatccctgataattatggagaggaagtagggatcgagttgaaa
aataattctggcgccccaacggagtgtgttagtaacttcgtcgttgattttatttggaaa
agcactagtttcgatcgcatgcagttagcgttgcggaaatttgctgtggacgacacttct
gtatccggttacatataccatagattgttaggacacgaggtggaagaggttttgtttcgt
tgtcatcttcctaaacatttcagtgctccgaatctgccagacttaaatcgttcacaagta
tatgccgtgaaacacgctgtacaaagacccttgtctctaattcagggaccgcctggcacg
ggaaaaactgtaaccagcgctacgatagtttatcaacttgtcaaacaaaacggtggtcct
gtattagtatgtgctccttcgaacacggctgtcgatcaactaacagaaaagatacacaaa
tcgaatttaaaggttgtgagactctgtgcgaagtcacgagaagcaattgattcaccagta
agctttcttgccttgcataatcaaatcaagaacatggagacgaatactgaattgcaaaag
ttgcaacaactaaaggatgagactggtgaattgtctagcgttgacgaaaaacgttataga
ttactaaagaaagcagcagaaaaagaattattagaggcagctgatgtgatatgctgcact
tgtgttggagctggcgatccaaggttacatagacttaaatttcactcaattcttattgat
gagagtatgcaagcaacggagcctgagtgtatggtaccggttgttcttggagcaaagcaa
ctaatccttgtcggtgatcattgtcaattagggccagtagttatgtgcaagaaagctgcc
agagctggtttatcacagtctctttttgaaagattagtagtattgggaattagacctttc
agattggaagtacaatatcgtatgcatccagatctatcacgattcccatcaaactttttt
tatgagggctctttgcaaaacggcgtatgcgcggacgagaggaaattgttgaaaattgac
tttccttggccagcacctgacaaacctatgtttttctacgttacacaaggtcaagaagaa
attgcaggaagtggtacatcatacttaaatcgaacggaagcatcgaacgttgaaaaaata
gcaacaagatttttacgttgtggagtaaaacctgaacaaattggagtaataactccgtac
gaaggtcaacgagcttatttagtgcaatacatgcaataccaaggatccttgcactcgaaa
ctgtaccaggaaatcgaagtcgctagcgtagatgctttccagggcagagagaaagatata
ataattatgtcttgcgttcgatcgaacgaacatcaaggtattggatttctgaatgaccca
cgaaggttaaacgtcgcgttaactcgcgcaaaatacggaatcataatcgtaggaaatcca
aaggtattgtcgaaacagccattatggaatcatctattaagtttttataaggaacagaaa
gtcctcgtagaaggaccactgaacaatcttaaagaatctatgattcaattcgccaaacca
aagaaactcgtcaatgctgctaatccaggctctcactttatgtctacgtcgatgtacgat
gcaagagaagctttgatcccaggttcggtatacgatagatcaggtactcaggtaaatgga
acgcagaatcataatccttattaccaaaggaacgtacctttagatatcttcagcagaacc
cacgacactattagttacattagcccagaaagagctcaagcagcgatgaacaatgtacca
gtcccagtgggaatgttcatgaatatggcacacgtaccaccacggttctataatcagcat
cagcaggccctacaggctagacaaaaccaacgtaatcggcgaggtacagctttatcgaag
aacaaacaaggcccacgaatgggtaaactaagtcaatcagaacagaatactcagccatat
agccagccaggattaccattaacacaaggcacgacgcaaggtatgtcacaaccaggtttc
agcctttctcaacccgggctgagtcaagcggaactttctcaagattcgttcgctgtcgga
gagtttcaatcacagatggacggattattatcacaagattcaacttatcagggtgatcga
agtggtttttatcaatccggacagtcacaagccgggggacaattctcccagccatattga
DBGET
integrated database retrieval system
