Bombus bifarius (two-form bumblebee): 117214968
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Entry
117214968 CDS
T07537
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bbif
Bombus bifarius (two-form bumblebee)
Pathway
bbif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117214968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbif03041
]
117214968
03009 Ribosome biogenesis [BR:
bbif03009
]
117214968
Enzymes [BR:
bbif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117214968
Spliceosome [BR:
bbif03041
]
Complex A
U2 snRNP components
U2 related factors
117214968
Complex B
117214968
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117214968
Ribosome biogenesis [BR:
bbif03009
]
Eukaryotic type
90S particles
Helicases
117214968
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
nSTAND3
T2SSE
AAA_7
Flavi_DEAD
ABC_tran
AAA_25
AAA_16
TsaE
Motif
Other DBs
NCBI-GeneID:
117214968
NCBI-ProteinID:
XP_033317249
UniProt:
A0A6P8NA87
LinkDB
All DBs
Position
Unknown
AA seq
718 aa
AA seq
DB search
MSKRRIEVVDPYIKRKADGSATSNSTTIPSTAPKNQVQLNPYTSLPFTPRYHELYKKRIT
LPVFEYRTDFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSRRIDNKGVACTQPRRVAA
MSVAQRVSEEMDVPLGVEVGYSIRFEDCSSPKTILKYMTDGMLLREGMSDPMLDAYQVIL
LDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP
VEIFYTPEPERDYLEAAIRTVIQIHMCEEVAGDLLLFLTGQEEIEEACKRIKREMDNLGP
EVGELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVID
PGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDNT
YPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDL
GAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMRFA
HIDGDHLTLLNVYHAFKQNFEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFCLKRTST
DFTSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNE
FVLTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacgaaggatcgaggttgtggatccgtatattaaacggaaagcagatggctcg
gctacatccaatagcacaactataccttcgacagcaccaaaaaatcaagttcagctaaat
ccttatactagtctaccttttacaccaagatatcatgaactttataaaaagagaatcact
ttaccagtatttgaataccgtactgattttatgagattattggcacaacatcaatgtatt
gtactcgttggagaaacaggttctggaaaaactacacaaataccacaatggtgtgtagaa
tattcaaggcgtattgacaacaagggtgttgcttgcactcagccaagaagagtagcagct
atgtctgttgcacaaagagtttcagaagaaatggatgttccattaggtgtggaagtagga
tacagtattcgttttgaagattgtagttctccgaaaactatattgaagtatatgactgat
ggtatgctgttacgtgaaggaatgtcagatcccatgcttgatgcttaccaagtgatatta
ttagatgaagctcatgaaagaactttagctacagatttgcttatgggtgtgttaaaagaa
gtgattaaacaaagaccggatttgaaacttgtgattatgagtgcaactttagatgctgga
aaatttcagcagtattttgataatgcacccttaatgaacgtacctggccgaactcaccct
gttgaaattttttatacacctgagcctgaaagggattacttagaggctgctatcaggaca
gttattcaaattcatatgtgtgaagaagtagcaggagatttgctcctctttttaactggt
caagaggaaattgaagaagcttgtaaaagaatcaaaagggagatggataatttaggtcca
gaagtaggtgaacttaaatgcataccactctattctacactgcctccaaaccttcaacaa
agaatctttgaaccagcaccacctacaaagcctaacggtgctattggtagaaaagtagta
gtttctacgaatattgcggaaacgtcgttaactatcgacggtgtcgtctttgtgatagat
cctggatttgcaaagcagaaggtatacaatcccagaattcgtgtagaatctctccttgta
tcacccattagtaaagcatctgcgcagcaaagagctggtagagctggacgcacaaggccc
ggaaaatgtttcagattgtatactgagaaggcatataaaaacgagatgcaagataatact
tatcctgaaattttaagatctaatcttggcagtgtcgtattgcaactgaaaaagcttggc
attgacgacttggttcatttcgattttatggaccctcctgcaccagaaactcttatgagg
gctttagaacttcttaattatttggctgctttagacgatgatggaaatctcacagatttg
ggtgctgtgatggcagaatttccattagatcctcaattggcaaaaatgctcattgcatct
tgtaatcataactgcagtaatgagatattgagcattactgctatgttgtcagtcccgcag
tgttttgtgaggccaaatgaatcaaaaaaagctgcggatgatgctaaaatgcgatttgca
catatcgacggagatcatttaacattactgaatgtttaccacgcctttaaacaaaatttc
gaagatccacaatggtgttacgataattttgttaattaccgatctttaaaaagtggggat
aatgttagacaacaactaagtagaataatggatagattttgtttaaaacgtacctctaca
gacttcacatcaaaagattattatatcaacattagaaaagcccttgtgaacggtttcttt
atgcaggttgctcatttagaaaggaccggtcattatttgaccattaaagataatcaaatt
gtacaacttcatccaagcagttgtttggatcataaacccgaatgggtaatttataacgag
ttcgtgcttacgaccaaaaattatatcagaacagtcacagatattaagcctgattggttg
cttaaaatagcaccacaatattatgatttacaaaacttcccacaatgtgaagcaaagaga
caattggaagtgatccaagcgaagttagattccaaacagtatcaggaaggattctaa
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