Bombus bifarius (two-form bumblebee): 117216278
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Entry
117216278 CDS
T07537
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bbif
Bombus bifarius (two-form bumblebee)
Pathway
bbif03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbif00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117216278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbif03041
]
117216278
Enzymes [BR:
bbif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117216278
Spliceosome [BR:
bbif03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117216278
Complex B
117216278
Complex C
U2 SnRNP specific factors
117216278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
MscL
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117216278
NCBI-ProteinID:
XP_033318752
UniProt:
A0A6P8NXM3
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MSYHRGGGNKPKGFGFAGFQMTGTKRSGSNVPPPPPNSTLSKQGYHTMNSITENALSACW
GMPKKRSKTEEEYFEDDDDPPPFSLEYIPAPGSPTYDWMKKSTSKEDSDSEEDPLDAFMA
GIDAEVKRNNYEAQLAEDERKEEKSKGFRADIDGEDDEESYYRYMEENPTAGLQQEESDQ
EIDYDEDGNPIAPPKKKDIDPLPPVDHSEIKYESFEKNFYNVHDEIANLSKQQIDDLKKT
LGIKVSGPSPPNPVTSFGHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAK
TGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEARKFGKVYNIQVC
CCYGGGSKWEQSKALEGGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFE
PQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVIVF
NNNPTGKWTWLLQNLVEFLSSGSLLIFVTKKLNAEELANNLKLKEFDVMLLHGDMDQIER
NKVITAFKKKEVTTLVATDVAARGLDIPHIRTVVNYDVARDIDTHTHRIGRTGRAGEKGT
AYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGGKGKSLNVGGAG
LGFRGRPETSSTSSCGSSSQGSKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQFRAS
SDHTWEQTITRPSVIMPPPPPVPPKPNTEQSKTQDVQSTNIGGERKRVRKSRWE
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaccgcggtggtggtaataagccaaaaggctttggatttgcggggtttcaa
atgactggtacaaaaagaagcggctctaacgtaccaccacctccaccaaattctactcta
agcaagcaaggctatcacactatgaattctatcaccgaaaatgccttatctgcatgctgg
ggaatgccaaagaagcgtagcaaaactgaggaggaatactttgaggatgatgatgatcct
ccgccattttccttggaatatattccggcacctggatctcctacttacgattggatgaaa
aaatcaacttcgaaagaagatagcgatagcgaggaagatccactagatgcatttatggct
ggtatagacgcagaggttaagagaaacaattatgaagcacaactggcggaggacgagcgc
aaagaagaaaaatccaaaggatttagagcggatatcgatggcgaggacgacgaggaaagt
tactacaggtatatggaagaaaatccaactgcgggtttgcaacaagaggaatctgaccaa
gagatcgattacgatgaagacgggaacccgatcgcgcctccaaaaaagaaagatatcgat
cccttacctcctgttgatcatagcgagataaaatacgaatctttcgagaaaaatttttat
aacgttcacgatgagatcgctaatttaagtaaacaacaaatcgacgatctgaagaaaact
ttgggaataaaggtatctggtccgtctccgccgaatccggttaccagtttcggtcatttt
ggtttcgatgatgcgttaataaaggctattagaaaaaacgaatacactcaacctacccct
atccaagctcaagcagttccggccgcattgagtggcagggatataataggtatagcgaaa
accggtagcggtaaaacagcagcttttatttggccaatgttagttcacataatggatcaa
agagaattgaaggcaggtgacggacccatcggtttaattcttgctcctacgagagaattg
tcacaacagatttaccaagaagcaaggaagttcgggaaagtgtataatattcaagtgtgc
tgttgttacggcggtggcagcaaatgggagcaaagtaaagcattggaagggggtgcggaa
atagtagtcgcaacgccgggtagaatgatagatttagttaaaatgaaagcaacgaattta
accagagtaacatttctagtattggatgaagctgatagaatgttcgatatgggtttcgag
ccgcaagtgcgttcaatatgtaaccacgtaaggccagacaggcaaacattgttgttcagc
gcaactttcaaaaagagggtagaaaagcttgcgagggatgttctgacggatccggttagg
atagtacaaggggacgtcggtgaggcgaatgctgatgtcacgcaacacgtgatagtgttc
aataataatcctactggcaaatggacgtggttgttgcagaatctagttgaattcttgagc
tctggtagtctgctgattttcgtaactaaaaagctcaatgcagaggaacttgcgaacaat
ctcaagttgaaagaatttgacgttatgctgttgcatggtgatatggaccaaatcgaaagg
aacaaagtaataacggcttttaaaaagaaggaagttactacactggtcgctactgacgtt
gctgctcgaggtttggacattccacatatcagaaccgttgttaattacgacgtcgcacga
gacatagatactcatacacataggataggtagaactggtcgagcgggtgaaaaaggaaca
gcgtatactcttgtaacagaaaaagacaaagaattcgcaggtcacctagttcgaaatttg
gagggtgcaaatcaggaagtaccaaagagtctcatggatttagcgatgcaaagcgcttgg
ttccgcaagtcaaggttcaaaggtgggaaagggaagagtttgaacgtcggaggggccgga
cttgggtttaggggaagaccggaaacatcttcaacttcgagttgtggttcctcgtcgcaa
ggatctaaggacataagcgaagttgttaaaaaattagaaagacatggaccaggtagcgat
cggttatcggctatgaaagctgcttttcgtagtcagtacaattctcagtttcgggcatcg
tcggatcatacgtgggaacaaactattacacggccttcggtgataatgcccccaccacca
cctgtacctccgaaaccaaatacggaacaatcaaagactcaggatgtacaaagtacgaat
atcggaggagaaaggaagagagttagaaagagtcggtgggaataa
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