Bombus bifarius (two-form bumblebee): 117216835
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Entry
117216835 CDS
T07537
Name
(RefSeq) vacuolar protein sorting-associated protein 13 isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
bbif
Bombus bifarius (two-form bumblebee)
Brite
KEGG Orthology (KO) [BR:
bbif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bbif04131
]
117216835
Membrane trafficking [BR:
bbif04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
117216835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
Motif
Other DBs
NCBI-GeneID:
117216835
NCBI-ProteinID:
XP_033319811
UniProt:
A0A6P8N111
LinkDB
All DBs
Position
Unknown
AA seq
3331 aa
AA seq
DB search
MVFESIVAELLNKVLGEYIQNLDCTQLKLSLWGGDVVLKDLLIKESALDILDLPIRLEYG
RLGKLILKIPFKDMWNGQIDAIVEELFILVVPSSQVAYDAEKEARIQLEAKHAELARVEK
KKQLADIKSQEKLDDSMIEKLIARMIKNIHIEIKKIHVRYEDHISYKDHPFSVGFTLSTF
TLESCTDSWQTTGNLKDMYAIPQIYKLCTLDGLAVYLNTTLEQFSNTKSNYLNLFHNGIA
TIDYNPPGYQYLLGPINVNAKLKLNPKPETDGSNYTIPKVWLDMEMQKLRIGLARKQYQT
IVQLGEGLDQAQKAAPFRKYRPNLTSYRGHYKEWWKFAYVCVLEEEVRRKRRNWDWNHMK
EHRDMCRSYADSYQTKLTTKKVTQEIADHLTQCERRLDIFNLVIIRQKIEMEVERMAERE
KNLKAKRGWFGFLWSSTQTEETQELNSAAAIMRKFEQAMTPQEKEKLYRAIDYQENSAPA
HYPETYEMIDTRFLLHELQIIILDTDKEHPCILDLQLHSVEAGFKSRPSANAILVTASIN
EMKLLGTKQDEHIPSLFNSHQHGADNVLISVSYEKNPLDKLCGDRMIVKSKSVDIIYDAQ
TVIEIANLFKVQNSSTLNNLQAAAAVQLEGLKEMSALGLEHAIQKHSVLDIQVNMQASQL
IIPHDGFYDSTKSLLVVNLGSLQIHSLEKPKGDDKTNVSVKQLISMGKTEEDVLLHLREH
SYDKFVLKIVDFQVLVSLPGEEWRTVLSNVDDSMTLLHPTTLEIQFHKCLITDDPLLPKL
RLIGQLPSVVVNITDIRLLQALSIAQSIPQPKEEPTDLQKSSMSKSVSQLSLLKDITTTI
AEKKKEEDSTVTSVKQTIDMEMKFEMKEFAIQVSSQKGNEIIPFVKFEVLQLEAEMLQRT
YDQEILLRLGGVQVKQHYNQREIFMITTPMLSGRHEYLITVQYINVNKRSPEFKTKYGSV
LQLLKLEFTTLDVLLHQEALINLLQFISYVQDQMNVIATSKLEKEPRIRPRPSHLVSIQE
ETSTFLREQIQKQKFRSTARRRRTMMEHVDLKVQAKVGTICMKITSDCREISAFYIDGIT
AGFIMKASYSQANVNLSSISIKDLNEASGYKDIVSVTEDTESLQIQAIMYNIESSDIDKN
NMSITVVMGCYRIVFLNMFVTSIMSFLNNFQTAQQAIRDASAAAAEAAKTNIKDVKESAA
RIGLAVKIKAPVIYVPMHSKSDHCLTLDMGNLTICNVFKKLEVTNDAGDCPIVDEMRIEL
QNLKLSRVRLNMEKFAIENEILLLEPVSFTLLIKRNLSTAWFTSIPDIDMSGRLNKINIL
ISKEDYATTLKVLEKNLGETVEDTKLTASVSQSEKKLEVEVLQHRQSDRFVRATAEDAED
PNSQEQVHTHTSIKFEFVMDSLMITLFTGGSKMLQSQSSLLHLPENGLAKFCLTHFALKG
RIFADGLMATSILLMNCTLDDIRQNRQGSLTRIMERTTAVPSMDDIEKESKPVRSMLDMT
IRQSSNDMFVDIRVFSFSIIVSLDYLMKVKDFFTTDEPSTNKTVQPKNYNESAVKKKQTV
SPTKKMFTVNVHIEKPDIILLEDMDDINSNCIILNTELLLKVRIMDEHQVIAGTIKDLSI
LAGIYNTAKRSDWIYQVLRPCSVSVAGSTPEGKGLHIDICCTDIHLSVSPGVIEILNKVV
HTATKTQEQDQEVIITERNYEGLWVVTPFEENDFWFLKTEVGVEAIEDIVYSDDEDTTVY
KPELAIISAPTILLTLEAGIGNKTLPMLLLHIGFESNISDWSTKTMNMECTMSVIMAYYN
SCLALWEPLIEPIERIRNEKRVSTPWELKVKIQFNDVSPDSRGASAASPTSDSETEELHQ
IPKMSIDIISTENLEITVTKTCLDVLQQLGNAFSSAMEASGKGAAKSVAPYVLKNETGLA
IVLDLERSHFKVFNDGSKLTSNNADSYMEVILESGASVQLAPRTTKTEIPLLDQLKIETI
KEKDDDKFIISFKEINRTLAVPVLRADKRFFSLKYRKDGSEEWGIVSDVIVDEGSTIVTL
RSILQVHNHFSQPISVYYMTKRGNEVECVGTVAPDSKLNLPLDTVYTPTNVYGLFFSVEG
YMVSLEQFIWKDLQKTVSMTKLLKCEARVRQEAVEPFYIKMFFMMIVVGSILYNNNTIGL
LLNAINWRSVFCRFIDCVKRLCLKTLPSEHKKYLEAPIQVVGEMEQVYFETTSRHTIAST
IYNVHLYPAVYLKNFLPIDIIVCLPGNVQEKLLEAGTSYQIPTIDPGKSYIIIKLPNYLE
KDWSCRGEILANPPEFSVWSFESFDSAQKVIMDLGMHTSYKHGSIIMALYCPFWMLNKTG
LMLSYRKSSKGGKEHSSPIKNLVCVKPHQSRTEYKRKKARLSGEDYLNVLYHPENFKGPI
LFSFRSKVFFGKKKAMIRVENGEWSDKFPIDVAGSEGVVICKYNGQIYQIGVHNQLTYNS
LTKQITFTPYYVLINNSDYLIECQEGNRPADPMIKVPARECAAYWPRSDHEQKTLSARIA
GNPEKTAPFIYTENHTTLLKLNNKYGGINVDIQISEGGVYISLSAYTHGNAPALIINHTP
HTINFWEKGSLNVRSVQSYNRMFYTWENPAGPRKLVWEDNNKKEIEETLRKDTLGGFQLP
DLEEEVYYVSFLDGTQRVLLFTTNMKVAEDCELAGDFEPIEQEITISIHGVGFSLVNNIM
RTELLYLCIASSGIMWETRKSVNHRWRNLDTREVIVIEEGYQKYIRELQMDKSPVQKVIL
EPKLEVDYLNMEMLKPHRRCLRRTFQTGLWLQYRTSVHQVQLHAKINRLQIDNQLTDCVF
PVILAPVPPPKSVTASTVMKPFAELSMVKRLLEHSNVQQFRYFKVLIQEFHVKVDIVFIN
AIVGLFEANEMNDAEESKLFKLDMKLVDEPLMYHVSLITTAEQKNFFDLLHFSPLKIHIS
FSMSGSGSGPSALPQVLNVLLQGIGVTLTDINDIVFKLAYFEREYIFMTNKQLISEATTH
YVGQAIKQVYVLVLGLDVIGNPYGLVVGTMKGIEDLFYEPFQGAIQGPGEFAEGLLLGMR
SMLGHTVGGMAGAVSKITGAMGKGIAALTFDKDYQRKRQEQLNKQPANLQEGLARSGKGL
IMGVVDGVTGVVMKPISGAKEEGVEGFFKGFGKGMVGLVTRPTAGVIDFASGSFGAVKRA
TELNEEVKKVRPSRFLQLDCLVRPYVRDEAEGHKILCELEKGKYANTDIYFYHMYINKDV
LLLTDKRIAYLEHSDLFGGWRVHWSHSWQEMSEQPKIVDKGVQIFIKDSSKKKKLGLFGS
TDQSKIILIPDYNIRQLLCDKMQQQINQYEL
NT seq
9996 nt
NT seq
+upstream
nt +downstream
nt
atggtttttgaatcgattgttgccgagctcctgaacaaggtgttgggagagtatattcaa
aatttggattgcacgcaattaaaactgagcttatggggaggtgatgtagtgttaaaagac
ttattaataaaagaaagtgcattagatatactggatctacctattcgattggaatatgga
agattaggaaaacttatattaaaaataccattcaaagatatgtggaatggacaaattgat
gcaatagttgaggaactatttatacttgtagtaccttcaagtcaggttgcttatgatgca
gaaaaagaagcaagaatacaacttgaagcaaaacatgcagaacttgcaagagttgaaaaa
aagaaacaattagcagatatcaaatcacaagaaaaactagatgattcaatgattgaaaaa
ctcattgcccgtatgataaaaaatattcacatcgaaatcaaaaagatacatgtgagatat
gaagatcatatctcatacaaagaccatcctttttcagttggttttacattgagtacattt
accttagaaagttgtacagattcttggcaaacaactggtaacttaaaagatatgtatgct
attccacaaatttacaagttatgcacactagatggtttggcagtgtatctcaatacaact
ctagaacagtttagtaatacaaaatcaaattatttaaatttatttcataatggaattgca
accatagattataatccacctggttatcaatacttattaggtccaatcaatgtcaatgca
aagttaaaattaaatccaaagccagaaacagatggaagtaactatacgattcccaaggta
tggttagacatggaaatgcaaaaattaagaataggattagcaaggaaacaatatcaaacc
atcgttcaattaggagagggtttagatcaagctcagaaagctgcaccatttagaaagtat
agaccaaatttaacatcatatagaggacactataaagaatggtggaagtttgcatatgtt
tgtgtcttagaagaagaagtacgtagaaaacgtagaaattgggattggaatcatatgaaa
gagcatcgagatatgtgtcgctcttatgctgacagttatcaaacaaaattaacgaccaaa
aaagtcacacaagaaatagcagatcatcttactcagtgtgaaagaagattggacattttt
aatttagtcattattaggcaaaagatagaaatggaagtagagagaatggctgaaagagaa
aaaaatctaaaagcgaaacgcggttggttcggtttcttgtggtccagtacacagacagag
gaaacacaagaattgaattctgcagctgctataatgcggaaattcgagcaggcaatgaca
ccacaagagaaagaaaagttatatagagcgattgactatcaagaaaatagtgcaccagct
cattatcccgaaacatatgaaatgatcgacacacgatttcttttacacgagctacaaatt
ataattttagatacagataaagaacatccttgtattttggatcttcaacttcatagtgtt
gaggctggtttcaaatcgagaccatctgctaatgctattttagttacagcatcaattaat
gagatgaaattattaggaacgaaacaagatgaacatattccttcactttttaattcccat
cagcatggcgcagataatgttttaatatcagtgtcgtacgaaaagaatcctctcgataaa
ttgtgtggcgatcgtatgatagtaaaatcgaaatctgtggatattatttatgatgcacag
accgtgatagaaatagctaatttgtttaaagtacaaaattcatcgactttgaacaatctt
caagcagctgctgctgtacaattagaaggtttgaaggaaatgtcggctttaggtttggag
catgctattcaaaagcattcagtattagacatacaggttaatatgcaagcttctcagtta
atcataccacatgatggattttatgatagtacaaaatcattattagttgtaaatcttggt
agcttgcaaatacattctttggaaaaaccaaagggcgatgataagacaaatgtatctgtt
aaacaattaatcagcatgggtaaaactgaagaagatgtgttattgcatcttagagaacat
agttatgataaatttgttttaaagatagtcgattttcaagtattagtttcattgcctggt
gaagaatggcgcacggtattatcaaatgtggatgattctatgacattattacacccaaca
acgcttgaaatccaatttcacaaatgtttaataacggacgatccattacttccgaaatta
agattgataggccaattaccatcagttgttgttaatataacagatattcgtttattgcaa
gctctttctattgctcagagcataccgcagccaaaagaggaaccaacagatctccagaag
tcatctatgagtaaatctgtttcacaattatctttgctgaaagatataactaccaccatt
gctgagaagaagaaagaagaagattctactgtaacttcagttaaacaaacgattgatatg
gaaatgaaatttgaaatgaaagaatttgcaatacaagtttcatcccaaaagggtaatgaa
ataataccatttgtgaagttcgaggtactacagttagaagcagagatgttacaacggact
tatgatcaagagatattattaagattaggtggagttcaagtcaagcaacattacaatcaa
agagaaatatttatgataaccactccaatgttatcaggtagacatgaatatttgataaca
gtacagtatataaatgtaaataagcgatctcctgaatttaagacgaaatacggatctgtt
cttcaattattaaaattagaatttacaacattggatgttttattacatcaagaagctctt
ataaatcttcttcaatttatatcatatgtgcaggatcaaatgaatgtcatagcaactagt
aaacttgaaaaagagcctcgcatacgtccacgaccttctcatttggtttccattcaagaa
gaaacttctacatttttaagagaacaaattcaaaagcaaaaatttaggtcaacggcacga
cggagaagaacaatgatggagcacgtagatctaaaagtccaagcaaaagttgggactatt
tgtatgaagataactagtgattgtagagaaatttctgcattttatatcgacggtatcact
gccggatttataatgaaagcttcctattctcaagcaaatgttaatttatcttctattagc
attaaagatcttaacgaagcgtcaggttacaaggatattgtatcagtgacagaagatact
gaatccttgcaaatccaagctataatgtataatattgagtcgtcagacattgataaaaat
aatatgtctatcacagttgttatgggctgttatcgtatcgtctttttgaatatgtttgtt
actagtataatgagttttttaaacaattttcaaacggcacaacaagccataagggatgca
tcagcagcagctgcagaagccgcgaagacaaatattaaagacgttaaagaaagcgcggca
cgtattggccttgcagtaaaaattaaagctccagttatatatgtaccaatgcattcgaaa
agtgatcattgtttaacactagatatgggtaaccttactatatgtaatgtttttaagaag
ttagaagttacaaatgatgctggagattgtcctattgtcgatgaaatgagaatcgagcta
caaaatttaaagttgtcccgcgtaagactaaatatggagaagttcgcgattgaaaacgaa
atattgctgttagaaccagtcagttttacattactcattaaacgtaatttatctactgcc
tggtttacatctatacctgatattgacatgtcgggtagactaaataaaattaatatatta
ataagtaaagaggattatgcaactacattgaaagtattagaaaaaaatttaggtgaaaca
gttgaagatacaaagctcacggcaagtgttagtcaatccgaaaagaaactcgaagtagaa
gttttacaacatcgacaaagtgataggtttgtaagagctactgcagaagatgcagaagat
ccaaactcgcaagagcaagtacatacacacacgtccatcaaatttgagtttgttatggac
agtcttatgattactttatttacaggaggttcaaaaatgctgcaatcacaaagttctctg
cttcatctaccggagaatggattagcgaaattttgtttaacccatttcgcgttaaaaggt
cgaatatttgccgatggattaatggcaacttcaattcttcttatgaactgtactttggac
gacatacgtcaaaataggcaaggttctcttacaagaatcatggaaagaactacggcagtg
ccttctatggatgatatagaaaaagaatccaaacctgttcgcagtatgttagatatgacc
attagacaaagttcaaatgacatgtttgttgatattcgagtcttttcatttagtattatt
gtgtcacttgactatttaatgaaagtaaaagattttttcactactgatgaaccatcgaca
aataaaacagtgcaaccaaagaattataacgaatcagcagttaaaaagaaacaaactgta
tcaccaactaaaaaaatgtttacggttaatgtacatattgagaaacccgatattattttg
ttagaggacatggatgacataaattccaattgtatcatattaaatactgaattactgttg
aaagtacgtataatggatgaacatcaagtaatagcaggcaccataaaagatttatcaatt
ctagctggtatatataataccgcgaagagaagtgattggatatatcaggtgctaagacca
tgcagtgtaagtgtagcaggttctacaccagaaggaaaaggacttcacattgatatttgt
tgcacagacattcacttatcagtttcgccaggtgtcatagaaatattgaataaagtagtt
catactgctacaaagacacaagagcaagatcaggaagttattattactgagcgaaattac
gaaggattatgggttgtcactccatttgaagaaaatgatttttggttcttaaaaacagaa
gtaggagtagaggccatagaagatattgtatattctgatgatgaagatactacagtttat
aagccagaattagcaataatctctgcaccaacaattttactcacattagaagcaggcatt
ggtaacaaaacattgccaatgcttctacttcatattggctttgaaagtaacattagtgat
tggagtacaaaaactatgaacatggagtgtacaatgtcggtaattatggcatattataat
agttgtctagcattgtgggaaccattaattgaaccaatagagaggatcagaaatgaaaag
cgggtttctacaccttgggaactaaaagttaaaattcaatttaatgatgtatcaccggat
tctagaggcgcaagtgcggccagtcctacatcagatagtgaaacagaagaattacatcag
attcccaaaatgtctattgatataatatcaactgaaaatttggaaataactgtgactaaa
acatgtctcgatgtattacaacaacttggtaatgcattttcatctgccatggaagctagc
gggaaaggagcggctaaaagtgtagcaccatatgttcttaagaatgaaactggtttagcg
atagttttagatttggagcgcagtcacttcaaggtttttaatgatggatccaaacttaca
agtaataacgcagattcgtatatggaggtaattcttgaatctggtgcatcagtacagtta
gctccgaggacaacaaaaactgagataccactgcttgatcaattgaaaattgaaacaatc
aaagaaaaagacgatgataagtttattatttcgtttaaagaaattaatagaactttggct
gtacctgtgttaagagctgataaaagattcttttcactgaaatatcgaaaggacggttct
gaagaatggggtattgtttctgatgttatagtagatgaaggaagtactattgttactctt
agaagtattctacaggtacacaatcattttagtcaaccaatatctgtatattatatgact
aaacgtggaaatgaagttgaatgcgtgggaactgttgctccagatagtaaattaaatctt
ccactagacactgtatatacaccaacaaatgtttatgggctatttttcagtgttgaagga
tatatggtttcgctagaacaatttatttggaaagatttacaaaaaacagttagtatgaca
aagctgttaaaatgcgaagctcgagtgaggcaagaagctgtagaaccattttacataaag
atgtttttcatgatgattgtggttggtagtattttatataataacaacactattggctta
ttattgaatgctattaactggcgatccgtattctgtcgtttcattgattgcgtcaagcgt
ctttgcttgaaaactttaccctcagagcacaaaaaatatctggaagcacctatacaggtt
gttggtgaaatggaacaagtttattttgagactactagtcgacatactatagcaagtaca
atctataatgttcatttatacccagctgtatatttgaagaattttttgcctatcgatatt
attgtatgtttacctggaaatgtgcaagaaaaacttttagaagctggcacatcttatcag
attcctacaattgacccaggaaagtcttatataatcataaaattaccaaactatttagaa
aaagattggtcatgtagaggtgagatacttgcgaatccaccagaattttctgtatggtct
tttgaatcttttgatagtgcacaaaaagttataatggatttgggaatgcatacatcatac
aaacatggttctatcattatggctttatattgtccattttggatgttaaataaaacaggc
ttgatgttgtcttatcggaaatcaagtaagggtggcaaagaacactcaagtccaatcaag
aatttggtttgtgtgaaacctcatcaatcacgtacagaatacaagaggaagaaagcacgt
ttgagtggagaagattatctaaatgtgctttatcatccagagaattttaagggaccaata
ttgttctcatttcgctccaaagtattctttggtaaaaagaaagcaatgatcagggtcgag
aatggtgaatggtcagataaatttccaatagatgttgcaggaagtgagggagtagtcatt
tgtaaatataatggccaaatatatcaaattggagttcacaatcaattgacttataattct
ttgacaaaacaaattacatttactccatattatgtactgataaataactctgattatctc
attgaatgccaagaaggtaataggccagctgatcctatgatcaaggtacctgccagagaa
tgtgcagcttattggcctcgttctgatcatgaacagaaaactctaagtgctagaatcgca
ggtaaccctgaaaaaactgcaccatttatttacacagagaaccatacgactttgttaaaa
ttaaataataagtatggaggaattaatgtagatatacaaataagcgaaggtggagtctac
atttctttatctgcatacactcatggaaatgccccagctttaattattaatcacactcca
catacaatcaatttctgggaaaaaggttcactaaatgtcagatctgtacagtcatacaat
agaatgttttacacttgggaaaatcctgcaggtccgcggaaattagtttgggaagacaac
aataaaaaagaaattgaagaaactcttcgaaaagacactttaggaggttttcaattgcca
gatctagaagaagaagtatactatgtatcatttttggatggtacacaacgagtgcttcta
tttacaacaaatatgaaagttgcagaagattgtgaactagcaggtgattttgaacctata
gaacaggaaataacaataagtattcacggagttggcttctcactcgttaacaatatcatg
agaactgaattgttatatttgtgtatagctagttctggaattatgtgggaaacgcgcaaa
tctgttaaccatcgttggcgcaatcttgacacaagagaggtaatagttatagaagaaggc
tatcaaaaatatatacgtgaattacaaatggacaaaagtccagtacaaaaagtaatactt
gaaccaaaattagaggttgattatttaaatatggaaatgttaaaaccacatcgtcgttgt
ctacgacgcacttttcaaactggtttatggttgcaataccgtacttcagtgcatcaagtg
cagttacatgcaaagatcaacagactgcaaattgataatcaacttacagactgtgttttc
ccagttatattagctccagtcccgccaccaaagagtgttacagcgagcacagttatgaaa
ccattcgctgaacttagtatggttaaacgactacttgaacatagtaatgtacaacaattt
cggtactttaaggttcttatacaagagtttcatgtgaaagtagatattgtatttattaac
gcgatcgtgggattgtttgaagcaaatgaaatgaacgatgcagaagaaagtaaattattt
aaattggacatgaaactcgttgatgaacctctgatgtatcacgttagtttgattactaca
gccgaacagaagaatttctttgatctacttcacttttctcccttgaagattcatataagt
ttctcaatgagcggtagtggtagcgggccatctgcactacctcaagtattaaatgtattg
ttacaaggaataggtgttacgttaactgacattaatgatattgtcttcaaattagcatat
ttcgaaagagagtacatttttatgaccaataaacagcttatttccgaagcaacaacgcat
tatgtaggacaagcaattaaacaagtttacgttcttgttctgggactcgatgtaataggc
aatccgtatggcctagtggtaggtactatgaagggcattgaagatttgttttatgaacct
ttccaaggtgccatacaagggcccggagaatttgcagaaggtttgcttcttggtatgagg
agtatgttaggtcacactgttggaggaatggctggagctgtttctaaaattactggagct
atgggtaaaggtatagctgccttaacgtttgacaaagactatcagagaaaacgacaagaa
cagcttaacaaacagccagccaacttgcaagaaggtcttgctcgtagtggaaaaggtttg
ataatgggtgttgttgatggtgtaactggtgttgtgatgaagcccatatcgggtgccaaa
gaagaaggtgtggaaggattctttaaaggatttgggaaaggcatggttggtcttgttact
cgaccaactgctggagttatagatttcgctagtggttcatttggagcagtgaaacgagca
actgagttgaatgaagaagtaaagaaagtaagaccatctagatttttacaactagactgc
ttggttagaccatatgtcagagatgaagctgagggacataaaatcttatgtgaattagaa
aaaggaaaatatgcgaatactgatatctatttttatcacatgtacattaacaaagatgta
ttattgcttactgataagagaatagcatacttagagcatagtgatttatttggtggatgg
cgggtgcattggtcccactcgtggcaagagatgagcgaacaaccgaaaatagttgataag
ggagtacagatatttatcaaagattccagtaagaagaagaaattaggattatttggtagt
acagatcaatcaaaaataattttaatacctgattataatattagacagcttctatgtgat
aaaatgcaacaacaaattaatcagtacgagttgtaa
DBGET
integrated database retrieval system
