Babesia bigemina: BBBOND_0103190
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Entry
BBBOND_0103190 CDS
T08062
Name
(RefSeq) CAF1 family ribonuclease containing protein, putative
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bbig
Babesia bigemina
Pathway
bbig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBBOND_0103190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbig03019
]
BBBOND_0103190
Enzymes [BR:
bbig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
BBBOND_0103190
Messenger RNA biogenesis [BR:
bbig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
BBBOND_0103190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
DUF6877
Motif
Other DBs
NCBI-GeneID:
24562540
NCBI-ProteinID:
XP_012766185
UniProt:
A0A061D4W6
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All DBs
Position
I:complement(722482..724473)
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AA seq
663 aa
AA seq
DB search
MYASAKLLATGATGSCCVELDAIRALNTIRHVYCWDSWSYAALNARCRRQERCYSVLNDA
NASSNAITGMLLQRRHGHSAVPYRRNSAHGVKRSFSSAATSRLTWKDHVQEARSALRTCD
FVAVDVEYTGLHLKDDRFVGLEKCYEAHASGAKQFVPCQIGLTAAKYLGKGVWKITPTSV
YTIPSSNKFFQVSTSTLQFLKDNNFDFNSWIRHGVEHLTPAEERDRKASIELRIKELDQL
VNSAPPGTPAAAVEFDLSSLTAEDRSVAEDVIGRIKDWIRSGDNNPLEIELDSAFQRLLM
HTIIGQQFPEVYSHSARRGDEKVICIYKSQVELYKQQKLTLQAELARIDEEIGVRALFDE
ISQHGKILVGHNCFYDMLHIYQTFYGELPESVEEFRKLWTDKFRNTLDTKYIAEFHDAVA
STQQSSTLKGLFDHMCATEPTAPGGTTISVHPLPGTSWVLPPAVLPLLAKTGTPAEISAD
SFKTADGSATVMQSHDAGYDSFMTCVLFVLQSGRILRSKHANWDKLCASSPDGSLNALAL
LEHIGPSTNCIRLVKSQPNAINLATNREGNMDRYFLMTGYPNSWKKWDIMKVWSPLWVSV
SVIDDTSCWVIVKNDEDIRNINLIYRMMKNPQFRLETYEQSRSRKPGTDATLTPVASDDR
KCI
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcttcggcgaagctcctggcgacgggcgccactggtagctgctgcgtagaattg
gatgcgattcgcgctctgaatacgataaggcatgtctattgttgggattcctggtcgtat
gctgccttaaatgcgaggtgccgccggcaggagcgctgttacagcgtcctcaacgatgcc
aatgcatcgtcaaacgctatcactggcatgctgttgcagcggaggcatgggcattcagca
gtaccatatcgcaggaatagtgcccatggagtgaaacgatctttctccagcgcggcaacc
tccaggttgacgtggaaggaccacgtgcaggaggcacgctctgctctccgaacgtgcgat
ttcgtggctgttgacgtggaatacacgggtttgcacctcaaggatgatcgtttcgtggga
ttggagaagtgctatgaagcgcatgcctctggcgccaagcagttcgtgccctgccaaata
ggtctgactgcagccaagtatctgggcaagggggtgtggaagatcacccctacctccgtg
tacacaataccgtcgtcgaacaagtttttccaggtgagcacgagcacgctgcagttcctc
aaggacaacaacttcgacttcaacagctggatccgccacggcgtggagcacctcacgccg
gccgaggagcgcgatcggaaggccagtatcgagctgcgcattaaagagctcgaccagctg
gtgaacagcgcacctcctggtacgccagcggcagccgtggaattcgacctatcctccctg
acggcggaggaccggtcggtagccgaggacgtcatcggtcgcattaaggattggattcgc
agcggggataacaaccccctggaaatcgaactagacagcgcgttccaacgcctgctcatg
cacacaatcatcggccagcagttccctgaggtctacagccattcagcccgtcggggcgac
gagaaggtgatctgcatctacaagtcgcaggtcgagttgtacaagcagcaaaagctgacg
ctgcaggctgaactggcacgcatcgacgaggaaatcggtgtgagggcgctattcgacgaa
atatcgcagcacgggaaaatccttgtgggtcacaactgtttctacgacatgctgcacatc
taccagaccttctacggcgagctgccggagtccgtggaggagttccgcaagctctggact
gataagttccgaaacacgctggacacaaaatacatcgccgagttccacgacgccgtggca
tcgacgcaacagtcgtccaccctgaagggcctgttcgaccacatgtgcgcgactgagccc
actgcaccaggcggaaccaccatctccgtccatccgcttcccggcacttcgtgggtgctg
ccgccggcggtgcttccgctgttggcgaaaaccggcacgccggcggagatatcggccgac
tccttcaagaccgccgacggaagcgccacggtcatgcagtcacacgacgctggatacgac
agcttcatgacctgcgtgctgttcgtgttgcagagcggccgcatcctccggtccaagcac
gcgaattgggataagctatgtgcgtcgtcgcctgacgggtccctcaacgcccttgcgctg
cttgagcacatcgggccgtccaccaactgcatccgcctggtgaaatcgcagccaaatgca
ataaacctggccaccaaccgcgagggtaacatggaccggtactttctgatgacggggtac
cccaactcgtggaagaagtgggacatcatgaaggtgtggtcgcccctgtgggtgtccgtc
agcgtgatcgacgacacctcctgctgggtgatagtgaagaacgacgaggacatccgcaac
attaacctgatctatcgcatgatgaagaacccgcagttcaggctcgagacgtatgagcag
tcgcgaagcaggaagccgggcacagacgctactctcacacccgtcgcgtcggatgaccgg
aagtgtatctga
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