Babesia bigemina: BBBOND_0107320
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Entry
BBBOND_0107320 CDS
T08062
Name
(RefSeq) u5 snRNP-associated subunit, putaitve, putative
KO
K12855
pre-mRNA-processing factor 6
Organism
bbig
Babesia bigemina
Pathway
bbig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BBBOND_0107320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbig03041
]
BBBOND_0107320
Spliceosome [BR:
bbig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
BBBOND_0107320
Complex C
U5 SnRNP specific factors
BBBOND_0107320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
PRP1_N
TPR_19
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Suf
TPR_16
TPR_17
ARM_TT21_2nd
HAT_Syf1_CNRKL1_C
TPR_2
TPR_1
TPR_CcmH_CycH
ARM_TT21_C
HAT_Syf1_M
TPR_21
Motif
Other DBs
NCBI-GeneID:
24562964
NCBI-ProteinID:
XP_012766609
UniProt:
A0A061D1B3
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All DBs
Position
I:complement(1598898..1602139)
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AA seq
1042 aa
AA seq
DB search
MSLLPGARKFVPPPASSAPAHYAPGAGRGATAFTTRADFGYAAATASDPFGKPPPGYVPG
RGRGATSFAGGVSRDDVADALDRSVVGGEDTVNLENEHLFQDAEYDDEDREADLIYESID
MRMDDRRRSRRESQIKAEVNRQRSEKPTIHQQLAPLKRELEALTMEDWESIPSIGDYSLK
RKQQNKRQPQYTAAPDSLLYSARAHMQSDTSIGTSTPLGFATPLGIMGGSATPLGARSVS
VMRTPAGTTSSLNDLGEARGAVLSITLDKVMDNLSGQTVVDPKGYLTDLNAMNIKSDSDI
ADIKKARTLLKSVIATNPTHAPGWIAAARIEELAGKLSSAREIIAQACEKCGDREDVWLE
AARLEKPEYAKAVLAKAVRMVPKSVKIWVEAANRESNTNDKRRILRKALEFVPNSVRLWK
DAISLEDETNAYIMLKRAVECVPDSVDLWLALARLCPYQEAQKVLNEARKQLPTNPDIWI
TAAKLEESNGNKPMVEKIIARGLENLTKKGVIHVRSNWLKNAEVCENNSFVATAQAIVKC
TMTTGLDPSMYLDSWLQDGEQFEEKGLYGCARAVYRSALDQMKTKKSLWLALAELETKHG
SPTDVDDVLTQATKYCPNSEILWLMLAKHKWLQGDVEAARAILADAHSKNQESEAISLAA
VKLEREHDEFDRARELLVRARKQCGTRKIWMQSVQLERQLGNYSVAIDMCEEALQLHPYF
DKLWMIAGQMRLELPEPNLLEAVGIFKCGTENCPWSTALWLLALEALMRNDEQAKARAMV
DMAKTKIRCILGPRLKQSEKVVTVNTKRLSQTELVRIAKAASNHPEGEVTSQEEDQELVD
GLVETIMKTCDLLWLRAIDIELECGSATNAHFMISSALQEFPESGCLWARAIFLEEKNAQ
NSKAVDALNQCPNSPIVVMAAARLFWRDKKTLKARKWFQRALALDDTNGIVWGTFLAFEL
EGGDSEAIKEVINGCVKAEPNAGYEWCAVVKRVANWRLPWPHKLYRFVEEYHHDILSNAL
EKLPPDIKSVLIPGEAPVENDS
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccttcctggagcgcgcaagttcgtcccgcctccggcgagcagcgcgccggca
cattacgccccgggcgccggtagaggggcgaccgctttcaccaccagagctgactttggt
tatgcagcagccacggcatccgacccgttcggcaagcctccgccaggttatgttcccggt
agaggtcgtggagccaccagtttcgccggcggtgtctctcgagacgatgtagccgacgct
ttggaccgctccgtcgtgggcggcgaggacacggtgaacctcgagaacgaacacctgttc
caagacgcagagtacgacgatgaagatcgcgaagcggacctcatatacgagtcgattgat
atgcgtatggatgatcggcgtcgatcgcggcgcgaatcgcagatcaaggcggaggtcaac
cggcagcggtcggagaagccgacgattcaccagcaactggcgcctctgaagcgtgagttg
gaggctctaacgatggaggactgggagtccatcccgtcgatcggtgactattcgttgaag
cgcaaacagcagaacaaaaggcagccgcagtacacggcggctccggactcgctgctctac
tccgcgcgcgcacacatgcagagcgataccagcatcggcacgtcaaccccgctcgggttc
gccactccgctgggcatcatgggtggcagtgccactcccctgggggcccgatccgtctcg
gtgatgcggacaccggcgggcacgaccagctcgctgaacgacctgggtgaggccaggggc
gccgttctctccatcacactcgacaaggtcatggacaacctcagcggccagacggtggtc
gaccccaagggttacctgacagatttgaatgccatgaacatcaagagcgacagcgacatt
gcagacatcaagaaggcgcgtacactgctaaagtcggtcatcgccaccaaccccacccat
gcacccggatggatcgccgctgcgcgcatcgaggaacttgctgggaagctgtcgagtgcg
cgagagatcatcgctcaggcgtgtgagaagtgcggcgaccgcgaggatgtatggttagag
gctgcgcgcttggagaagccggagtacgcaaaggcggttttggccaaggcggtgcgcatg
gttccgaagtccgtgaagatatgggtggaggctgccaaccgcgaaagtaacacgaatgac
aagcgccgcatactcagaaaggcactcgagttcgtgcccaactcagtgcgtctttggaag
gacgcaatatcgctcgaagatgaaaccaatgcctacatcatgctaaagcgcgccgtggag
tgcgtgcctgactccgttgacctttggctggccctggcgaggctatgcccataccaggag
gcccagaaggtgctgaacgaggcgaggaagcagctgcccacgaacccagatatctggata
acggctgctaaactggaggagtcgaacggtaacaagcctatggttgagaagatcatcgca
cgtggtctggagaaccttaccaagaagggtgtcatacacgtgcgttccaactggctgaag
aatgccgaagtgtgcgaaaacaactcatttgtggctaccgcccaggccattgtaaagtgc
acgatgaccacgggtctcgatccctcaatgtacctggattcttggctccaggatggtgag
cagttcgaggagaagggcttatacggatgcgctagggcagtgtatcgcagcgcactggat
caaatgaagacgaaaaagtcgctctggctggcgctggcagagttggagacgaagcatggc
tcgccgactgatgtcgacgacgtgcttacacaggccaccaagtactgccccaactccgaa
attctgtggctcatgttagccaaacacaagtggttgcaaggcgatgttgaggctgcgcgt
gccattctagctgacgcgcattccaagaaccaagagtcggaggccatctccctggctgca
gttaagctcgagagggaacacgacgaattcgaccgagcgcgtgagctgttggtgcgcgcg
cggaagcagtgtggtacgcgcaagatttggatgcagagtgtacagctggagcggcagctg
ggcaattatagcgtggccatcgacatgtgtgaggaggcgctgcagttgcatccctacttc
gacaagttgtggatgatagcggggcaaatgcgcctagagcttccagaacccaacttactc
gaagcggtgggtattttcaagtgcggcaccgaaaactgcccatggagcaccgccttgtgg
ctgctcgccctggaggcgctaatgcgcaacgacgaacaggcgaaggccagggcgatggtg
gacatggccaaaacgaaaatcagatgcatcctcgggccgcgcctcaagcagtcggagaag
gtggtaaccgttaacaccaagcggttgtcccagaccgaactcgtgcgcatcgccaaggcg
gcttccaaccacccggaaggcgaagtgacgtcacaagaggaagatcaggagctggtagat
ggcctcgttgagacgatcatgaagacatgcgatctgctatggctgcgcgctatcgatata
gaactggagtgtggtagcgcgactaatgctcatttcatgatctcatctgctttacaagag
ttcccggagtcaggttgtctctgggctcgggccattttcctcgaggagaagaacgcgcag
aactccaaggcagttgatgcactgaaccagtgccccaactcaccgatagttgtgatggca
gccgctcgattgttctggcgggacaagaagacgctcaaggctcgcaagtggttccaacgt
gcgctcgcactggacgacaccaatggaatagtatgggggacgttcctcgcgttcgagctt
gaagggggcgactctgaggccatcaaggaggtgatcaacggctgtgttaaggcggagccc
aacgcagggtacgagtggtgcgcagttgtgaagcgcgttgcgaattggcgtctaccgtgg
ccacacaaactctatcgtttcgtcgaggagtaccatcacgacatcctgtcgaacgctttg
gaaaaactgccgccggacatcaagtcagtcctgataccgggagaggcgccagttgagaat
gatagctaa
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integrated database retrieval system
