KEGG   Babesia bigemina: BBBOND_0202810
Entry
BBBOND_0202810    CDS       T08062                                 
Name
(RefSeq) SNRP core protein,putative
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
bbig  Babesia bigemina
Pathway
bbig03018  RNA degradation
bbig03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bbig00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    BBBOND_0202810
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBBOND_0202810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbig03019]
    BBBOND_0202810
   03041 Spliceosome [BR:bbig03041]
    BBBOND_0202810
Messenger RNA biogenesis [BR:bbig03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     BBBOND_0202810
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     BBBOND_0202810
Spliceosome [BR:bbig03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    BBBOND_0202810
 Complex C
  U2 snRNP components
    BBBOND_0202810
SSDB
Motif
Pfam: LSM VGCC_beta4Aa_N LSM14 Hfq SAP_new25
Other DBs
NCBI-GeneID: 24563665
NCBI-ProteinID: XP_012767310
UniProt: A0A061D878
LinkDB
Position
II:668908..669520
AA seq 109 aa
MAGSALWPEPLFFNFFQTLVEKGANVTIELKNDLQLTGRLHAVDQYLNFKLSNVTANDTE
RYPHLLSVVNCFVRGSVVRYVFLNSSDVKTEELQELCRREAMKQSSEKK
NT seq 330 nt   +upstreamnt  +downstreamnt
atggcaggatccgcactctggcctgagcctctattcttcaacttcttccaaacgctggtc
gagaagggcgcgaatgtaaccattgagctgaaaaacgacctgcagctgactgggcggctc
cacgcagtggaccagtatctgaatttcaagctgagcaacgtgacggccaacgacactgag
cgatacccgcacctgctgtctgttgtgaactgctttgtgcgaggttcggtggtgcggtac
gtgttcctgaattcttcggacgtcaagacggaagagctgcaggagctgtgtcgtcgagag
gctatgaagcagagctcggagaagaagtga

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