Babesia bigemina: BBBOND_0207580
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Entry
BBBOND_0207580 CDS
T08062
Name
(RefSeq) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein,putative
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bbig
Babesia bigemina
Pathway
bbig03020
RNA polymerase
bbig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBBOND_0207580
09124 Replication and repair
03420 Nucleotide excision repair
BBBOND_0207580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbig03021
]
BBBOND_0207580
03400 DNA repair and recombination proteins [BR:
bbig03400
]
BBBOND_0207580
Enzymes [BR:
bbig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBBOND_0207580
Transcription machinery [BR:
bbig03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
BBBOND_0207580
DNA repair and recombination proteins [BR:
bbig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
BBBOND_0207580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_6
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
HTH_17
Motif
Other DBs
NCBI-GeneID:
24564144
NCBI-ProteinID:
XP_012767789
UniProt:
A0A061D4V9
LinkDB
All DBs
Position
II:complement(1674963..1680278)
Genome browser
AA seq
1771 aa
AA seq
DB search
MTTVAELNKPFSPCDLKKVRAIEFGVLDPEMLKRLSVCEVTQTEFYREGIPVTGGLNDLR
MGTTDARHNCLTCYMDLKHCTGHFGHITLSKAMYHSSFITAVMKVLRCVCFNCSSLLCAK
DDPRVIQIMKLRATALRLNRLVEVCSTSPRCQHATLAGSKMKGCGYPQPRYSKEGTSLLV
QFTEKHRQMLEEVDEECEEIKRTFTADEAYKILKGISHEDMRYLGFNPERSQPAWLILQV
LPVPPPPVRPYVAYGSDRSEDDLTLKLLDIVKANNMLKKHDERATAPHILQEISQLLQYH
ITTLFDNDIPGMPVASTRSKKPIKSIRARLKGKDGRLRGNLMGKRVDFSARTVITGDPNL
PIDIIGVPKSIAMTLTFSETVTPLNFESLRSKVEMGPHEWPGAKFIVRDDGTRFDLRHVK
RASDLQLEYGYRVERHLQDGDYILFNRQPSLHKMSIMGHRCKVLPYSTFRLNLSVTSPYN
ADFDGDEMNLHLAQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLGISKFTRRDC
FLTKDMLMNLLMWIPYWDGKLPQPCIFHPVPLWTGKQVITIILTFDQLNSLTCINLMRNS
GTSIENDNPYCSANDSKVIISKNEHLSGIICKKTVGTSSGSLIHVLWHEAGPERCKDFLS
TVQKVVNNWLIHNGFTVSCSDIMASESTLAQVAEILDRSKKEVQRLVGLSQKGKLKCQPG
KSLFESFEARVNKELNEAREQSGTIAAKSLDERNNILAMVNSGSKGSTINISQIIACVGQ
QNVEGKRIPFGFRDRSLPHFIQHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDT
ACKTSETGYVQRRLMKAMEDIMVHYDKTVRNGVGDILQFLYGEDGMGAEYIEDQTLDLMK
LDFAELNRLYAHDFRNENYGVGWILDETIRNNILTDFSQQVVLVEEYQRLLDMKSILCKQ
VFPDGETRQHLPINISRLLEYAKTQFPMTPESRKLMNPVDIAQRVQQLLDGLTIVVTSGP
QDILAAEAQENATILIKAHLSTALHSRRLMEREKIGNLALDWLLGEVKRIFYKSICHPGE
CVGAVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVRNVKTPSLTIHLER
GVAHDQERAKDMQTRLEYTTLDKVVAMSQVIYDPHVSRTIVTRDYNWVREYYEFPDDDMG
RLGPWVLRIQLSNKVMTDKRLTMKEIVDRIYQEFSHDEIDCINTDDNNDELVLRIRVKYS
SMEVDQQNLGENEGEFLQRFMSQVLVNVKLRGVAKISKVYMREEAQIKYNESNGRFERVS
QWVLDTDGCNLEDVLPIPCVDAQRSISNDISEIFHVLGIEAARMALLRELRAVISFDGSY
VNYRHLSLLCDVMTQKGHIMSITRHGLNRADRGPMVKCSFEETLEALVDAAVYAEVDNLK
GVTENVMLGQLCPMGTGCFDIMIDEEKLRDANQNLQIVPDSAMSGFTSPDSTSPDSMSPA
KINSMLSPLPFSPSYAALMMSPVINASSPGFAASPAIDTKALGGSFSPTVMSPQSPASPG
YAPLSPNPLSPNPLSPNPLSPTMGMMSPTSPVYSPTSPVYSPTSPVYGQSAAVYSPASPA
YSPTSPVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT
SPAYSPTSPAYSPTSPAYSPTSPNLGYSPTSPVYQPTSPAYSPTSPAYSPTSPAYSPTSP
AYSPTSPAYSPTSPEYSPQDPFSPNPFEEEN
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgtcgcggagctcaacaagccgttctcgccgtgcgacctgaagaaggtccgc
gcgatcgagttcggtgtactcgacccggagatgctgaagcgcctttctgtctgcgaggtg
acgcagacggaattctaccgtgagggcattccggtgaccggcggcctgaacgaccttcgg
atgggcacgaccgacgcacgtcacaactgtttgacgtgctacatggacctgaagcactgc
actggccacttcggccacatcaccttgtcgaaggcgatgtaccactcgagtttcatcact
gcggtgatgaaggtgctgcgctgcgtgtgcttcaactgcagcagcctgctgtgcgccaag
gacgacccgcgcgtgatacagatcatgaagctgcgcgcgaccgcgctgcggctgaaccgg
ctggtggaagtgtgctcgacttcgccgcgttgccagcacgcgacgctggcggggtctaag
atgaagggctgcgggtacccgcagccgcggtacagcaaggagggcaccagcctgctggtg
cagttcacggagaagcaccgccagatgctggaggaggtggacgaggagtgcgaggagatt
aagcgcacgttcactgctgacgaggcgtacaagatcctgaagggcatctcgcacgaggac
atgcggtacctcgggttcaaccccgaacggtcgcagccggcgtggctgattctgcaggtg
cttcccgtgccgccgcctcccgtccgtccgtacgtggcgtacgggagcgaccgcagcgag
gacgacctgacgctgaagctgctcgacatcgtgaaggcgaacaacatgctgaagaagcac
gacgagcgcgcgacggctcctcacattctgcaggagatttcgcagctgctgcagtaccac
atcaccacattgttcgacaacgacataccgggcatgcccgtggcgtcgacgcgctcgaag
aagcccatcaagtcgatccgcgcgcgcctaaagggcaaggacggccgtctgcgtggcaac
ctgatgggaaagcgtgtggacttctccgcgcgtactgtcatcacgggcgaccccaacctg
cccatcgacatcatcggcgtgccgaagtccattgccatgactctcacgttcagcgagacg
gtgacgccgctcaacttcgagagcctgcgcagcaaggtcgagatgggcccgcacgagtgg
ccgggcgctaagttcatcgtccgcgacgacggtacgcgttttgacctgcgccacgtgaag
cgcgcgagcgacctgcagctggagtacggctaccgcgtggagcgccatctacaggacggt
gactacatcctgttcaaccgccagccatcgcttcacaagatgagtatcatgggccaccgt
tgcaaggtgctgccgtactccacgttccgcctgaacctgtcggtcacctcgccgtacaac
gcggacttcgacggagacgagatgaatctgcacctcgcccagacgcacgagacgcgcgcc
gaggtgaagcacctcatgctcgtgcccaagcagatcgtttcgccgcagggtaaccgtcca
gtcatgggtatcgtgcaggactctctgctgggcatcagcaagttcacgcgtcgcgactgc
tttttgaccaaggacatgctgatgaacctgctgatgtggatcccgtactgggacggcaag
ctgccgcagccgtgcatcttccaccccgttccgctgtggaccggcaagcaggtgatcacg
atcatcctgacgttcgaccagctgaactcgctgacgtgcatcaacctgatgcggaactcc
gggacctcaattgagaacgacaacccgtactgctccgccaacgactcgaaggtcatcatc
agcaagaacgagcacctgtctggcatcatctgcaagaagaccgtgggcacgagctcaggg
tcgctgatccacgtgctgtggcatgaggccggccccgagcggtgcaaggatttcctgtcg
accgtgcagaaggtggtgaacaactggctgatccacaacgggttcaccgtgtcgtgctcg
gacatcatggcgagcgagtccacgctggcccaggtggccgagattctggaccggtccaag
aaggaggtgcagcggctggtgggcctgtcgcagaagggcaagctgaagtgccaacccggt
aagtcgctgttcgagtcgttcgaggcccgtgtgaacaaggagctgaacgaggccagggag
cagagtggtaccatcgccgcgaagagtttggacgagcgcaacaacatcctggccatggtg
aacagtggatccaaggggtccaccatcaacatttcccagatcatcgcatgtgtgggtcag
cagaacgtggagggtaagcgtatccccttcggtttccgcgaccgttctctcccgcacttc
atccagcacgactacggccccgagagccgtgggttcgtgtccaactcgtacctgtccggt
ctgactccgcaggagatgttcttccacgccatgggtggtcgtgagggtatcatcgacact
gcgtgcaagacctctgagaccggttacgtccagcgtcgtctcatgaaggccatggaggac
atcatggtgcactacgacaagaccgttcggaacggcgtgggcgacattctgcagttcctg
tacggcgaggacggcatgggcgcggagtacatcgaggaccagacgctggacctgatgaag
ctcgacttcgcggagcttaaccggctgtacgcgcacgacttccggaacgagaactacggc
gtcgggtggattttggatgagaccatccgcaacaacatcctcactgacttcagccagcag
gtggtgctggtcgaggagtaccagcgtctgctcgacatgaagtccatcctgtgcaagcag
gtgttccccgacggcgagacgcggcagcacctgcccatcaacatctcgaggctgctcgag
tacgccaagacgcagttccccatgaccccggagagccgcaaactgatgaacccagttgac
attgcccagcgcgtgcagcagctgctggacggtctaaccattgtcgtgactagcggcccc
caggacattctggctgccgaggcgcaggaaaacgccaccatcctcattaaggcgcacctc
tcgacggcgctccactcacggcgtctcatggagagggagaagatcggcaacctggcgctc
gactggcttttgggtgaggtgaagcgcatattctataagtcgatctgccaccccggcgag
tgcgtgggcgctgtggcagcgcagtccatcggtgagcccgccacgcagatgaccctgaac
actttccacttcgccggtgtgagttcgaagaacgttaccctgggtctgccccgcctcaaa
gagcttatcaacgtggtgcggaacgtcaagacgccgtcgctcaccatccacctcgagcgc
ggcgtcgcccacgaccaggagcgcgcgaaggacatgcagacccggctggaatacaccacg
ttggacaaggtggtggcgatgtcgcaggtcatctacgacccgcacgtgtcgcgaacgatc
gtgacgcgggactacaactgggtgcgtgagtactacgagttccccgacgacgacatgggc
cgcctgggtccgtgggtgctgcgcatccagctgtcgaacaaggtgatgacggacaagcgt
ctcacgatgaaggagatcgtggaccgcatctaccaggagttcagccacgacgagatcgac
tgcatcaacaccgacgacaacaacgacgagctggtgctgcgcatccgcgtgaagtactcc
agcatggaggtcgaccagcagaacctgggcgagaacgagggcgagttcctgcagcgtttc
atgtctcaggtgttggtgaacgtgaaactgcgtggcgtggccaagatttctaaggtgtat
atgcgtgaagaggcccagatcaagtacaacgagtccaacggtaggttcgagcgtgtgagc
cagtgggtcctggataccgacggctgcaacctggaagacgtgctgccgatcccctgcgtc
gacgcgcagcgctcgatttcgaacgacatcagcgagatcttccacgtgttgggtatcgag
gcggcgcgtatggcgctgctgcgtgagctgagggccgtcatcagtttcgacggtagctac
gtgaactatcgccacctgtcgctgctgtgcgatgtgatgacccagaagggccacattatg
tccatcacgcgccacggtctgaaccgcgcggaccgtggccctatggtgaagtgtagtttt
gaggagactctggaggcgctggtggacgccgccgtttacgcggaggtggacaacctcaag
ggtgtcacggagaacgtcatgctgggtcagctttgccccatgggtaccggttgtttcgac
atcatgatcgacgaggagaagcttcgcgacgcaaaccagaacctgcagatcgtgccggat
tccgccatgtctggattcaccagcccggactccacgagcccggattccatgtcgccggct
aaaataaactcgatgctgtcgccgctgccgttcagcccgtcgtacgcggctctgatgatg
tcgccggtgatcaacgcgtcgtcgcccgggttcgcggcgtcccctgccattgacaccaag
gctctcggaggtagcttctctccgaccgtgatgtcgccgcagtcgcctgcgagtcccggg
tacgccccgctgtcgccgaacccgctgtcgccgaacccgctgtcgccgaaccccctatcg
ccaactatgggcatgatgtctccgactagcccggtgtactcgccgactagtcccgtgtat
agtccgacaagccccgtgtacggccaatctgcggcggtgtacagccccgcgagcccggct
tattccccaacaagccccgtgtactcgcccaccagcccggcctactcgcctacgagccca
gcatactctccgacgagtcccgcttactcgccaacgagcccagcatactctccaacgagt
cctgcctactcgccgacaagccccgcgtactcgcctaccagtcccgcgtattcgcccacg
agtccagcgtattcgccaaccagcccggcgtactcgcctaccagtcccgcgtattcgccc
acgagtccgaacctcggttactctccgacgagccccgtgtaccagcccacgagccccgcg
tactcgccgacaagtccggcctactcacccacgagcccggcctactccccgacgagcccg
gcgtactcgcctaccagtccggcgtactcgccgacgagtccagagtattctccgcaggat
cctttctctccgaacccgttcgaggaggagaactaa
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integrated database retrieval system
