Babesia bigemina: BBBOND_0211560
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Entry
BBBOND_0211560 CDS
T08062
Name
(RefSeq) DEAH box RNA helicase, putative
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bbig
Babesia bigemina
Pathway
bbig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BBBOND_0211560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbig03041
]
BBBOND_0211560
Enzymes [BR:
bbig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBBOND_0211560
Spliceosome [BR:
bbig03041
]
Complex C
Other components
Step II factors
BBBOND_0211560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
SRP54
AAA_16
ATPase
cwf21
AAA_30
Flavi_DEAD
ResIII
SLFN-g3_helicase
T2SSE
NB-ARC
ABC_tran
nSTAND3
NACHT
Motif
Other DBs
NCBI-GeneID:
24564553
NCBI-ProteinID:
XP_012768198
UniProt:
A0A061D7P5
LinkDB
All DBs
Position
II:complement(2605597..2608695)
Genome browser
AA seq
1032 aa
AA seq
DB search
MDPFDDFQVTRLPKSSKPRPPSPKRTAAYRKPKYLSSGDDVAEAGEFFGERGDHVDARHG
ADRAANGDSGPAKSTGRDAVYDRILDHMWYDRDDESFLMQNNYDEESQTYLADQEAKRQA
QLPGGKSQLGQGKQQMRGSLSFQKHIDTSLWELSRIRQGGAGSRLSTLEMQGLNASNMHK
DEVKKIVLVRSVIPPFIYDSLRKETRDALDASVAAGDNTFNHIYNKFLNQNISVIKDVTS
DIAQMAKKGSAILRQLKEESERNASRVRFWDLEGSKLGALLHLDDTKPATASIRDSAGAG
DPSKGGTNSNSKYAQHLGEEDLPEDEMEQKLKEYKSKLQNTREQLPVFKCREELLSYIGE
FQVMVVVGETGSGKTTQLAQFLYEAGYSKRGVIGCTQPRRVAAVSVCQRVASEMGSRVGD
LVGYSIRFEDLTSKNTAVKFMTDGILLRETLMDPELDRYSCIIMDEAHERSLNTDVLFGI
LKSVVARRRDLRVIVTSATMDADKFSKFFGNCPIYKIPGRTFPVRVEYMRSMGNDYVESA
VDKCVSLHISEGPGDVLIFMTGQDDINATCELLDMKLYKVMMSSNSNDLQPFCVLPIYSQ
LPSELQQRVFKKYPYRKVIVSTNIAETSLTLDGIKFVIDSGFCKLKVYNPKVGMDSLQIT
PVSQAGANQRAGRAGRTAPGVCYRLYTERTFLNDLFDNNVPEIRRTNLCNVVLLLKSLKV
KNLTEFDFIDPPHMENILSAMLQLWILGGIDEFGELTDVGRKLVHYPLEPPLGKMMIAGE
REQCLSEVLTVVSVMSAPNVFVVENESDAQRETADGATREKFMVPESDHLTLLNVYKQWV
ANGRSDTWCAQHRLQPKSLRRASEVRQQLLDIVLKQDIKETTCGTNWDQVRRAICAGYFH
NASKLKGLGEYTNLRSFAPCFLHPSSALYGMGYTPDYVVYHEVVITSKEYMRHVTAVDAE
WLYELGPSFFYLKNINAGENAQRNKDKLENQRLLQEMQYKRTRQETLERAQVPGADKGSS
GVTFGKRKSSMR
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggatccgtttgacgacttccaggtgacgcggctgccgaagtcgtcgaagccgcggccg
ccatctccgaaacgcacggcagcctatcgcaaaccgaagtacctctccagcggcgacgat
gtggcggaggctggtgaattcttcggggagagaggtgaccatgttgatgcgaggcatggc
gccgaccgtgccgcaaatggcgacagcggtcccgccaagagcacgggccgtgacgcggtg
tacgacaggattctagaccacatgtggtacgaccgcgacgacgagagcttcctgatgcag
aacaactacgacgaggagagccagacgtatctcgccgaccaggaggccaagcggcaggcg
cagctgcctggcggcaagagccagctagggcaaggcaaacaacagatgcgcggttcgctc
tcgtttcagaagcacatagacacctcgctgtgggagttgtcgcgcattagacagggtgga
gctgggtcccgtctgagcactttggagatgcaggggctgaacgccagcaacatgcacaag
gacgaggttaagaagatcgtgttggtgcgctccgtgataccgccgttcatctacgacagc
ctgcggaaggagacgcgtgatgcgctcgacgccagcgtggcagcgggcgacaacacgttc
aaccacatctacaacaagttcctgaaccagaacatctccgtcataaaggatgttacttcc
gacatcgcgcagatggcaaagaagggcagcgccatcctgcgccagctcaaggaggagtcg
gagcgcaatgcgagccgcgtgcgattctgggacctcgaaggctccaagttaggcgcgttg
ctgcacctggacgacaccaaacccgccacagcgagcatcagggattccgctggtgccggt
gaccctagcaagggtggaactaacagcaacagcaaatacgcgcagcacttgggggaggag
gacctgccggaagacgagatggagcagaagctcaaggagtacaagtccaagttgcaaaac
acccgagaacagctgcccgttttcaagtgccgagaggagctgctgtcgtacattggcgaa
ttccaggtgatggtcgttgtgggagagactggttccggtaagacgacgcagctggcgcag
ttcctgtacgaggcgggctactcgaagcgcggcgtcatcggctgcacgcagccgcgtagg
gtcgccgcggtgtccgtttgccagcgtgtggcctcagaaatgggctcccgggtgggcgac
ctcgtcgggtactccatccgtttcgaggatttgaccagcaagaacaccgcggtcaagttc
atgacggacggtatcttgctgcgtgagaccttgatggaccccgagctggaccgctacagc
tgcatcatcatggacgaggcgcacgagcgcagcctgaacaccgacgtgctgtttggcatt
ttgaagtccgtggtcgccaggcgccgtgacctccgcgtgatagtcacctcggccaccatg
gacgccgacaagttctccaagtttttcggcaactgccccatctacaagatcccggggcgc
acgttccccgtcagggtcgagtacatgcggtccatgggcaacgactacgtggagtccgcg
gtcgacaagtgcgtgtcgctccacatctcagagggccctggcgacgtgctgatcttcatg
accgggcaggacgacatcaacgcgacgtgcgagctgctggacatgaagctctacaaggtg
atgatgtcctccaacagcaacgacctgcagccgttctgcgtgctgccgatatacagccag
ctgcccagcgagctgcagcagcgcgtcttcaagaagtacccgtaccgcaaggtgattgtg
tccaccaacatcgcagagacatcgctgaccttggacggcatcaagttcgtgatcgacagc
ggcttctgcaagctgaaggtgtacaacccgaaggtcggcatggacagcctgcagataact
ccagtgagccaggccggcgccaaccagcgtgccggtagggcggggaggaccgcacccggc
gtctgctaccgcctgtacaccgagcgcacgttcctgaacgacctgttcgacaacaacgtg
ccggaaattcggcgaaccaacctctgcaacgtcgtgttgctgctgaagtcgctgaaggtg
aagaacctcacggagttcgacttcatcgacccgcctcacatggagaacatcctgagcgcg
atgctgcagctgtggatcctgggcggcatagacgagttcggcgagctcaccgacgtcggc
cggaagctggtccactacccgctggagccgcctctgggcaagatgatgatcgccggcgag
cgcgagcagtgcctgtctgaggtgcttaccgtggtgtccgtgatgtccgcgcccaacgtg
ttcgtggttgagaacgagtccgacgcgcagcgggaaacggctgacggcgccaccagggag
aagttcatggtgccggaaagtgaccacctgaccctgttgaacgtttacaagcagtgggtc
gccaacggtcgctctgacacctggtgcgctcagcaccggctgcagccgaaatcgctgcgc
cgagcgtcggaggtgcggcaacagctcctggacattgtgctgaagcaggatatcaaggaa
accacctgtggcaccaactgggaccaggtgcgccgggcgatatgcgcgggatacttccac
aacgcctcgaagctcaagggcctaggcgagtacaccaacctgcggagcttcgcgccgtgt
ttcctgcacccgtcgtcggcgctctacggaatggggtacaccccggactacgtggtgtac
cacgaggtcgtcatcaccagcaaggagtacatgcgccacgtcaccgccgtggacgccgag
tggctctacgagctgggcccctcgttcttctacctcaaaaacatcaacgccggggagaac
gcgcagcgcaacaaggacaagctggagaaccagcgcctgctgcaggaaatgcagtacaag
cgcacgcgccaggagaccctggaacgcgcccaggtccccggcgctgacaagggcagttcc
ggtgtcactttcggcaaaaggaagagcagtatgcgttga
DBGET
integrated database retrieval system
