Babesia bigemina: BBBOND_0211760
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Entry
BBBOND_0211760 CDS
T08062
Name
(RefSeq) eIF-4A-like DEAD family RNA helicase, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bbig
Babesia bigemina
Pathway
bbig03013
Nucleocytoplasmic transport
bbig03015
mRNA surveillance pathway
bbig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BBBOND_0211760
09122 Translation
03013 Nucleocytoplasmic transport
BBBOND_0211760
03015 mRNA surveillance pathway
BBBOND_0211760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbig03019
]
BBBOND_0211760
03041 Spliceosome [BR:
bbig03041
]
BBBOND_0211760
Enzymes [BR:
bbig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBBOND_0211760
Messenger RNA biogenesis [BR:
bbig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
BBBOND_0211760
Spliceosome [BR:
bbig03041
]
Complex C
Other components
EJC/TREX
BBBOND_0211760
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
BBBOND_0211760
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
24564575
NCBI-ProteinID:
XP_012768220
UniProt:
A0A061DAT7
LinkDB
All DBs
Position
II:complement(<2662985..>2664796)
Genome browser
AA seq
542 aa
AA seq
DB search
MTKGKGAVPAEDLVDYEEQEAGQVSTRTVIKSATVAKTGRDDGTMGRGSYVAIHASGFRD
FFLKPEILRAIGDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSVLQQLDV
QEDGTLAGGMKRDAGGDVVAPGGDRVACLGISHTRELAYQIKNEFDRFAKYMTGVRCEVV
YGGVPIARDIAMLKDPAKCPHILVGTPGRLLALIRGKHLSMEGIRHFVLDECDKCLEKLD
MRSDVQAIFMSTPKKKQVMFFSATMNNEVRDVCKRFVQSPVEVFVDDESKLTLHGLLQYY
IKLSESDKNRKLNDLLDTLEFNQVIIFVKSISRAQTLDNLLNECNFPSIAIHAGLEQTER
IARYTQFKNFDKRIMVSTDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKGL
AITFVATQDDSNALADVQKRFEVDIPEMPESIDTSLYYLSMRIFACRPRGLPSFGLGLWE
VWIKRWLYSTPLTTTRLHTLKSEMRLGTHCPSPDGCAIDSENAVIPAAAREVFMIPTACV
KC
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagggtaagggcgccgtgccggcggaggacttggtggactatgaggagcaagaa
gccggccaggtctccacgcgcacggtgattaaatcggcgacggtcgccaaaaccggccgc
gatgacggtactatgggccgtggcagttacgtcgccattcacgcgagcggtttccgtgac
ttcttcctgaagcccgagattttgagagccatcggtgacgccggtttcgagcacccgtcg
gaggtccagcacgagaccattcctcacgccatcactggtgtggacattttgtgccaggcc
aagtccggtatgggaaagaccgccgtgttcgtgctgtccgttctgcagcagctggatgtg
caagaagacgggacccttgctggtggtatgaagcgtgacgccggaggtgacgtcgttgct
cctggaggtgaccgtgtggcgtgccttggaatcagccacacccgtgagcttgcgtaccag
atcaagaacgagttcgaccgtttcgccaagtacatgaccggtgtgcgctgcgaggttgtt
tacggaggtgtgccgatcgctcgcgacattgcgatgctgaaagaccccgccaagtgcccg
cacattctcgtgggtactcccggtagactgctcgctctcatccgcggtaagcatttgagc
atggagggtatccgccacttcgtgctcgacgagtgtgacaagtgtcttgagaagcttgac
atgcgttctgacgtccaggcgatcttcatgtctacgccgaagaagaagcaggttatgttc
ttctccgccaccatgaacaacgaggtacgtgacgtgtgcaagcgtttcgtgcagtcgcct
gtggaggtgttcgtggacgacgagtcgaagctgacgctccacggtctcctgcagtactac
attaagctttctgagagcgacaagaatcgcaagctgaacgacctgctcgacactctggag
ttcaaccaggtcatcattttcgtgaagtccatttcgagggctcagacgctcgacaacctg
ctcaatgagtgcaacttcccgtcaatcgccatacacgctgggcttgagcagaccgagcgc
atcgctcgctacactcagttcaaaaacttcgacaagcgcatcatggtctcgaccgacctg
ttcggaaggggcatcgacgttgagcgtgtgaacatcgttatcaactacgacatgcccgac
tccaccgactcgtacctgcaccgcgtgggccgcgcgggtaggttcggcacgaaggggctc
gcaatcacctttgttgcgacgcaggatgactcgaatgccctggccgacgtgcaaaagaga
ttcgaggtcgacatccccgaaatgccggagtccatcgacacctctctgtactatttgtct
atgcgcatatttgcgtgccgtccacgcgggctgcccagtttcgggctcggcctgtgggag
gtctggataaagcggtggttgtacagtactccgctgacgacaaccaggttgcacacgctc
aagagcgaaatgagacttggcacccattgcccgagccccgacggttgcgctatcgatagt
gagaacgccgtgattccggccgccgcccgcgaggtgttcatgataccgacagcttgcgtg
aagtgctga
DBGET
integrated database retrieval system
