Babesia bigemina: BBBOND_0402180
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Entry
BBBOND_0402180 CDS
T08062
Name
(RefSeq) pre-mRNA splicing factor RNA helicase, putative
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bbig
Babesia bigemina
Pathway
bbig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BBBOND_0402180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbig03041
]
BBBOND_0402180
03009 Ribosome biogenesis [BR:
bbig03009
]
BBBOND_0402180
Enzymes [BR:
bbig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBBOND_0402180
Spliceosome [BR:
bbig03041
]
Complex A
U2 snRNP components
U2 related factors
BBBOND_0402180
Complex B
BBBOND_0402180
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
BBBOND_0402180
Ribosome biogenesis [BR:
bbig03009
]
Eukaryotic type
90S particles
Helicases
BBBOND_0402180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Flavi_DEAD
AAA_22
AAA_19
nSTAND3
ResIII
AAA_30
TsaE
SRP54
UvrD-helicase
AAA_25
Helicase_RecD
DAP3
AAA_29
T2SSE
ATPase
AAA_7
SLFN-g3_helicase
PhoH
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
24566269
NCBI-ProteinID:
XP_012769914
UniProt:
A0A061DB05
LinkDB
All DBs
Position
IV:complement(480442..482633)
Genome browser
AA seq
709 aa
AA seq
DB search
MVLFHVALVLTDATPRKAAERATENDDADPKINPFTKTPYSQRYYDILEKRRQLPAWGAR
KNFVKLLRRNQVLILAGDTGSGKTTQIAQFVVDANLNDGLQVAVTQPRRVAAMSVAARVA
NEMDVKLGETVGYCIRFEDRTSKNTVIKFMTDGMLLREAINDPMLSSYGVIILDEAHERT
IATDVLFGLIKEVAASRENLKIVVMSATMDGDKFQAYFNGADMLTIPGRTFPVDIYYTAE
TQRDYLDAVYTAVITIHRDEPDGDILVFLTGEDEIRKLEDRFHPVTNMYKKKLCVVPLYG
SMEPAEQAKVFEPVEGRKCVLATNIAETSLTIEGIVYVVDTGYAKQNVYNPRARVESLLV
APISQASATQRAGRAGRTRPGKCFRLYTEATYNELIPQTFPEILRSNIATVVLNLKKLGI
DDLVHFDFMDPPAPETMMRALEELNYLGALDDDGELTPTGDLMGEFPLDPQMSKVIVSSP
KFNCTRDVVAVCAMLSVPNLMTKRRDKYDRFNKYASSLVQRVTHDTSDHITFLRIFNTYQ
AMLHKAKEKLSEFFLLTRVNAKAMEAATRIFDQLMNLAHKRLKQPAATVSSQGNTEDDVL
KCLCTGFFQQVAVNPVGELITMKDNQVVHLHPSSVVTHADWAIFHQVVHTSRTYIRTVSE
VYPSWLFEASLEYFNPAEVPDRHVRERLKADLRFYKEELDNAKKNKRRR
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggtgttgttccatgtcgctttggtcttgactgatgcgacgccgcgcaaagcagcggag
cgagccacggaaaatgatgacgccgacccgaagattaacccattcacgaagacgccctac
tcgcagcggtactacgatatcctcgagaagcggcggcagctaccagcatggggtgcgcgc
aaaaacttcgtcaagcttctcaggcggaaccaggtgctgatcctggcgggagacacgggt
tccgggaagaccacccaaattgcgcagttcgtggttgacgccaaccttaacgacgggctg
caagtggcggtcacgcagccgcgtagggtggcggccatgtcagtcgccgcacgcgtcgca
aacgaaatggatgtaaagctaggggaaactgtggggtactgcatcaggttcgaggaccgc
acgtcgaagaacaccgttatcaagttcatgacggacggaatgctcctgcgggaggccata
aatgacccgatgttgtccagctacggcgtcatcattctcgacgaagcgcatgaacgtacc
atcgcaaccgatgtcctgttcggcctcattaaggaggtggccgccagccgcgaaaacctc
aagatcgtcgttatgagtgccaccatggatggcgacaagttccaggcgtacttcaacggc
gccgacatgctgaccataccgggacgcacgtttccggtggacatatactacacggccgag
acgcaaagggattacctggacgctgtgtacacggccgtcatcaccatccacagggatgaa
cccgacggagacatcctggtgttcctgaccggtgaagacgaaatacgcaagctcgaagat
cgttttcatcctgtgactaatatgtataaaaagaagctgtgtgtcgtgcccctgtacggc
agcatggagccggccgagcaggcgaaggtattcgagccggtggaggggcgcaagtgcgtc
ctggccaccaacatcgccgaaacgagtctcacaatcgaaggcatagtctacgtcgtagac
acgggctacgcgaagcagaacgtctacaacccgcgcgcccgcgtagagtcgctgctggtg
gcacccatctcgcaggcatccgccacccaacgcgccggtcgtgccggaaggaccagaccc
ggcaagtgcttccggctatacacggaagccacctataacgagctcatcccgcagacattc
ccagagatcctgcgctcgaacattgccaccgtggtgctgaacctgaagaagctgggtatc
gacgacctggtacacttcgatttcatggacccgcctgcaccagagaccatgatgcgggca
ctcgaggagctgaactacctcggagctctggacgacgatggggagctgacccccacgggc
gacctcatgggcgagttcccgctggacccacaaatgtccaaggtgattgtctcctcgccg
aagttcaactgcacccgtgatgtagtggcggtatgcgcgatgctctccgtgcccaatctt
atgaccaagcgcagggacaagtacgatcgtttcaataagtacgcgagctctctggtgcag
agggttacgcacgatacgagcgaccacatcacgttcctgaggattttcaacacctaccag
gcgatgctgcacaaagcaaaagaaaagctaagtgagttcttcttactcacacgcgtgaat
gcgaaagcaatggaagcggccacgcgcatattcgatcagctcatgaacctcgcacacaaa
cgccttaagcaaccggcggccaccgtcagtagccaaggcaataccgaggacgatgtgttg
aagtgtctctgcaccgggttcttccagcaggttgccgtaaaccctgtgggcgaactaatc
accatgaaggacaaccaggtcgttcacctgcacccgtccagtgttgtcacgcacgcggat
tgggcgatattccaccaggtggtgcacacgtcgcgcacgtacatccgaacggtcagcgag
gtgtacccatcgtggctgttcgaggcgtccctcgaatacttcaacccggcggaagtcccg
gaccgccatgtcagggagcgccttaaggcggacctcaggttctacaaagaggagctggac
aacgcaaagaagaacaagcgccgtcgataa
DBGET
integrated database retrieval system
