Babesia bigemina: BBBOND_0405950
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Entry
BBBOND_0405950 CDS
T08062
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4, putative
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
bbig
Babesia bigemina
Pathway
bbig03018
RNA degradation
bbig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BBBOND_0405950
09123 Folding, sorting and degradation
03018 RNA degradation
BBBOND_0405950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbig03019
]
BBBOND_0405950
03041 Spliceosome [BR:
bbig03041
]
BBBOND_0405950
Messenger RNA biogenesis [BR:
bbig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BBBOND_0405950
mRNA degradation factors
5'-3' decay
Lsm complex
BBBOND_0405950
Spliceosome [BR:
bbig03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
BBBOND_0405950
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
24566652
NCBI-ProteinID:
XP_012770297
UniProt:
A0A061DBM4
LinkDB
All DBs
Position
V
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AA seq
137 aa
AA seq
DB search
MIPNAATSDNLKSGQESTSVNIVYHSIIAPQLIELKSGETYSGILASCDSFMNVHMVNAI
CTSKRGDEFWKLDECFIRGNNVKSFRLPEEVADLAVEDAKGTREFSVMYQCDVATARPST
SNSRARGSFFSVINDTK
NT seq
414 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgaatgcagctacctctgacaatcttaagagcgggcaagagtcaaccagcgtc
aacatcgtataccattccatcatagcacctcagctcatagaactcaagagcggtgaaacg
tacagtgggatccttgcttcttgcgattcattcatgaatgttcacatggtcaatgcaata
tgcacatcaaagaggggcgacgagttttggaaactagatgagtgctttattcggggaaac
aatgttaaatcattccgcctgccggaagaagttgccgatttagctgttgaggatgcaaaa
ggtacccgtgagttttctgtgatgtatcaatgtgacgtagccacagcaagaccgtccacg
tccaattccagggcaagaggtagtttctttagtgtgataaatgataccaagtag
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