Bison bison bison (American bison): 104989259
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Entry
104989259 CDS
T08726
Symbol
PNLDC1
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bbis
Bison bison bison (American bison)
Pathway
bbis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104989259 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbis03019
]
104989259 (PNLDC1)
Enzymes [BR:
bbis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104989259 (PNLDC1)
Messenger RNA biogenesis [BR:
bbis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104989259 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104989259
NCBI-ProteinID:
XP_010839191
Ensembl:
ENSBBBG00000011161
UniProt:
A0A6P3HAL3
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGIAGFQAFEVQLVLRKALPDIWTVLRDQGVIVKKVSTQHRWYLETTSCDRESCWKE
KILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASRCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWKVHSAVPIPEPSFPLYLDVLAPYVNQVNLIRAGVPKIN
FAGPDSPSIRPPILILTVRKWPGVSEQQVYREFQNLCKFDVRRLTRSQFLLMTNKFKDTR
SILKEYRCHPTLXISLYRYWRHSPDINCLLQVCSVITTWAFIAFLLGGAGL
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacataggcgccgatgagtttgagcagagcctccctctgctgcaggagctcgtcctg
ggtgcggacttcgtgggtctggacatagagttcacgggccttcgttctaacctgtctggg
ccccagcagatcagtctgtttgacttgccatcagagtggtatctaaagacccgtcagagt
gttcagcagttcaccatctgtcagatcggattgtctgtgttctccagtattgaaggcgag
tcgaacaagtatgtagctcattcatgtaacttcttcctcttccctacgacatttggggtt
ttggactcagagttctctttccaggcttccagtgttcagtttttgaaccagtatggcttc
gactataacaagtttctcaaaaatgggatcccctatatgaacgaagaacaggagaagaaa
attaagcacaacattctgactgggaactggaaagttcgcagctctctggacaaagaccag
atcaaggtggtgattgacgaggtgacgcgctggctggacctggcggaggaaggggactgg
atgaccctccctggtattgctggcttccaggccttcgaggtccagctcgtactgaggaag
gccctccctgacatctggacagtgctgagagaccaaggggtgatcgtgaagaaggtgagt
acgcagcaccgctggtatcttgagaccacctcctgtgatcgagagagctgctggaaggag
aagattcttctctccgcaaggggcttttctgtgtttttccagatgctggtgaaagcccgg
aagcccttagtgggacataacatgatgatggatctgctgcatctccatgagaagttcttc
agacctctcccagaaagctacgatgagtttaagctgaatatccacaacctatttcctgtt
ctcattgacaccaagaatgtgacaaaggatatctggaaggaactcaatttcccaagggtt
tcaaatctctcagaagtttatgaagtcctgaacagtgacttgaaccccaccaagaactct
gggccggtgatcattcacgccagcaggtgtgagaagtacgtggagaccaagtacccccat
gaagcggcatacgacgccttcctgtgcgggtcagttctgttgaaagtggcgcacctgctc
ctgtggaaggtacacagtgctgttcccatccccgagcccagcttcccgctctacctggac
gtgctggctccctacgtgaaccaggtgaatcttatccgagctggggtccccaaaatcaac
tttgcgggcccagactcccctagcatccgcccccccatcctcatcctcaccgtcaggaag
tggcctggggtcagcgagcagcaggtctaccgcgagtttcagaacctctgcaaatttgac
gtcaggaggctcacgcggagccagttcctgctcatgaccaataagttcaaggacacgcgg
agcatcctgaaggagtacaggtgccacccgacactgnncatctccctgtaccgctactgg
agacactccccggacatcaactgcctgctgcaagtctgcagcgtcattaccacctgggcc
ttcattgcgtttctcctgggaggagctggcctgtga
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