Bison bison bison (American bison): 104995602
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Entry
104995602 CDS
T08726
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bbis
Bison bison bison (American bison)
Pathway
bbis03030
DNA replication
bbis03410
Base excision repair
bbis03420
Nucleotide excision repair
bbis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104995602 (LIG1)
03410 Base excision repair
104995602 (LIG1)
03420 Nucleotide excision repair
104995602 (LIG1)
03430 Mismatch repair
104995602 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbis03032
]
104995602 (LIG1)
03400 DNA repair and recombination proteins [BR:
bbis03400
]
104995602 (LIG1)
Enzymes [BR:
bbis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104995602 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
104995602 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
104995602 (LIG1)
DNA replication proteins [BR:
bbis03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
104995602 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
104995602 (LIG1)
DNA repair and recombination proteins [BR:
bbis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
104995602 (LIG1)
NER (nucleotide excision repair)
Other NER factors
104995602 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
104995602 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
Motif
Other DBs
NCBI-GeneID:
104995602
NCBI-ProteinID:
XP_010847843
Ensembl:
ENSBBBG00000011401
UniProt:
A0A6P3HZB7
LinkDB
All DBs
Position
Unknown
AA seq
958 aa
AA seq
DB search
MERLGPQPEGLLVTSPALLCGCRNRKLVTSGEEEWGENSDTIMQRSIMSFFQPKKEGKAK
KPEKETSKSIRETESPPKVALKERNRVVSEGDSPVKRPGRKATRVLGSEGEEEEEEAPTT
PRSQKPASDSPQASPPSPVTLPESSPSRSKPSPAVASPSGIPKRRTARKQLPKRTFQDVL
KEQGEDKDPETKKKKEEEAETPTESLPEPEGGDKEEVEGGDQPTTPPEPRKTSTESPTES
VSEPGVTVKQEPQEDGQAQPPPKTPKTLSSFFSPRKPAVKKEAKEEGPGALRKDETKGHV
DPASYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVSARLRMVETLSNLLRSVVA
LSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATGRQLESVRAEVAEKGDVGL
VAESSRSTQRLVLPPPALTAAGVFAKFRDIAQLAGSASTTKKIDVIKGLFVACRHSEARF
IARALSGRLRLGLAEQSVLAALAQAVSLTPPSQECPPAVVDAGKGKTAEARKTWLEEQGM
ILKQTFCEVPDLERIVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEA
AFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIPKIKLPSVTSFILDTE
AVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQL
LRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHN
WLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASYDEESEEFQAICKLGTGFS
DEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSDVWEVKCADLSLSPIYPAARGL
VDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQIQNQQGAEPDSEQEEFY
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcttggaccgcaacccgaaggactcctggtgaccagtcccgctctactctgc
ggttgcaggaacaggaaactggtgaccagcggagaggaggagtggggagagaattctgat
accatcatgcagcgaagtatcatgtcatttttccagcccaagaaagagggcaaagcgaag
aagccggagaaggagacatccaagagcatcagagaaacggagtcccctccgaaggtggca
ctgaaggagcggaatcgagtggtgtctgagggtgactctccagtgaagaggccagggagg
aaggcgacccgggtcctgggcagcgagggcgaggaggaggaagaggaagcccccaccacc
cccagaagccagaagcctgcttcagactctccacaggcctcgcctcccagtcctgtcaca
ctgcctgagagcagcccttcccgctccaaaccctccccagcagttgcatccccatcaggg
atcccgaagcgtcgcacggcccggaagcagcttcccaaacggacatttcaagatgtcttg
aaagagcagggcgaggacaaggacccagaaactaagaagaagaaggaggaagaagcggag
acaccaacagaaagcctcccagagcctgaagggggcgacaaggaggaagtggaaggcggg
gaccagcccacgacgccccctgagccccggaagacctccacagagtccccgacagaaagc
gtctcagagcctggggtgacggtgaagcaggaaccacaggaggatggccaggctcaaccg
ccccccaaaactccaaagaccctcagcagtttcttctccccccggaagccagctgtcaaa
aaagaagcgaaagaagaaggacctggtgctctgagaaaggacgagaccaagggacacgtg
gacccagcgagctataatcctgccaagaacaactatcaccccatcgaagatgcctgctgg
aaggcgggccagagggttccttatctggctgtggcccgggcgttcgagaagatcgaggag
gtctctgctcggctccggatggtggagacgctgagcaacctgctgcgctccgtggtggcc
ctgtcacctgctgacctcctgcccgtcctctacctgagcctcaaccgcctggggccgccc
cagcagggcctggagctcggcatcggagagggcatcctcctcaaggcagtggcccaggcc
acgggtcggcagctggagtccgtccgggccgaggtggccgagaagggtgatgtggggctg
gtggccgagagcagccgcagcacccagaggctcgtgctgcccccgcctgcgctcactgcc
gccggcgtcttcgccaagttccgggacatcgcgcagctggcaggcagcgcttccacaacc
aagaagattgacgtcatcaaaggcctctttgtggcctgccgtcactcagaggcacgtttc
attgccagagccctgagtggacggctgcgcctcgggttggctgagcagtcggtgctggcg
gccctcgcccaggccgtgagcctcacgccccccagtcaagaatgcccccccgccgtggtg
gacgctgggaagggcaagacggcagaagccagaaagacgtggctggaggagcaaggcatg
atcctgaagcagactttctgtgaggtacctgacctggagcggatcgtccccgtgcttctg
gaacacggcctggagcggctcccggagcactgcagactgagcccaggggttcccctgaaa
ccaatgttggcccacccgacccggggtgtcagtgaggtcctgaagcgctttgaggaggca
gctttcacctgcgagtacaaatacgacgggcagagggcacagatccacgttctggaaggc
ggggaggtgaagatcttcagcaggaatcaggaggacaatactggaaggtaccccgacatt
atcagccgcatccctaagattaaactcccatcggtcacatccttcatcctagacacagaa
gctgtagcttgggaccgggaaaagaagcagatccagccattccaagtcctcaccacccgc
aaacgcaaggaggtggacgccgcggagatccaggtgcaggtgtgtctgtatgccttcgat
ctcatctacctcaacggagagtccctggtacgtgagcccctctcccgacgccggcagctg
ctccgggagaacttcgtggagacggagggcgagttcgtctttgccacctccctggacacc
aaggacacggagcagatcgcagagttcttggagcagtcggtgaaagactcctgcgagggg
ctgatggtaaagaccctggacgtggacgccacctacgagatcgccaagaggtcacacaac
tggctcaagctgaagaaggactacctcgagggtgtgggcgacaccctggacctcgtagtg
attggtgcctacctgggcaaggggaaacgggccggccggtacgggggcttcctgctggcc
tcgtacgacgaggagagcgaggagttccaggccatctgcaagctcggaactggcttcagt
gacgaggaactggaagagcaccaccagaggctccaggccttagtgctgcccaccccgcgc
tcctacgtccgggctgacggtgcggtggcccccgaccactggctggaccccagcgacgtg
tgggaggtgaagtgcgcggacctctccctgtcccccatctaccctgcggcccgaggcctg
gtggacagcgagaaggggatctccctccgcttccctcgttttattcgcgtccgtgaggat
aagaagccggagcaggccactaccagtgcccaggtggccggtctgtacaagaagcagagt
cagattcagaaccagcagggtgcggagccggactccgagcaggaagagttctactag
DBGET
integrated database retrieval system
