Bison bison bison (American bison): 105001038
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Entry
105001038 CDS
T08726
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bbis
Bison bison bison (American bison)
Pathway
bbis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105001038 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbis03019
]
105001038 (SKIV2L2)
03041 Spliceosome [BR:
bbis03041
]
105001038 (SKIV2L2)
03009 Ribosome biogenesis [BR:
bbis03009
]
105001038 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
bbis03016
]
105001038 (SKIV2L2)
Enzymes [BR:
bbis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105001038 (SKIV2L2)
Messenger RNA biogenesis [BR:
bbis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105001038 (SKIV2L2)
Spliceosome [BR:
bbis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105001038 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
105001038 (SKIV2L2)
Ribosome biogenesis [BR:
bbis03009
]
Eukaryotic type
Pre-60S particles
Helicases
105001038 (SKIV2L2)
Transfer RNA biogenesis [BR:
bbis03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105001038 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
105001038
NCBI-ProteinID:
XP_010855457
Ensembl:
ENSBBBG00000016351
UniProt:
A0A6P3IV86
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGKCFDGKLQSESTNVGKN
KRDADFEGADEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctttcggggatgagctgttcagcgtgttcgaggacgactcgaccacggct
cctggagccaaaaaagacaaggagaaggggaagtggaaggggcctccagggtctgcagaa
aaggccggaaaatgttttgatggtaaattacaatcagagtcaactaatgttggaaaaaac
aagagagatgcagacttcgagggtgctgatgaacctatttttggaaagaaacccagggtg
gaagagtcaataactgaagatttaagtttggctgacctgatgcccagagtcaaggtacag
tcagttgaaactgtcgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ctaccacttaaacctcgagttggaaaagctgcaaaggaatatccattcattcttgatgcc
tttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatctgcacat
acatcagcaggaaaaactgtttgcgctgaatatgccattgcattggcgctaagagaaaaa
caacgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcctacagca
tcctgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaagttgcctgggtcatttttgatgaaattcattacatgagagattcagagcgt
ggtgtcgtatgggaagaaactattattttgcttcctgataacgttcactatgtctttctt
tcggctactattccaaatgcccgacagtttgctgagtggatttgccacttacataaacag
ccttgtcacgtaatttacacagattatcggcctactccattacagcactatatttttcca
gccgggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagatcagaag
gggcgaaaaggaggaacaaaaggtccatcaaacgtattcaagattgtgaagatgattatg
gaaagaaattttcaacctgttattattttcagttttagtaagaaagattgtgaagcttat
gcacttcaaatgaccaaattagatttcaacacagatgaggaaaagaagatggttgaagaa
gttttcagtaatgcaattgactgcttgtctgatgaagataaaaagctccctcaggttgaa
aatgtacttcctctcttgaaacgggggattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttatttgccact
gagacttttgctatggggattaacatgccagctagaactgttttatttacaaatgcccga
aaatttgatgggaaggatttccgatggatttcctctggtgaatatattcagatgtctggt
cgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagatgaaaag
atgagcccaacgataggaaaacaactacttaagggctcagctgatcctctaaatagtgct
ttccatttgacctacaacatggttttgaacttactacgagtagaagaaattaatcctgag
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattccaggagtagta
gagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaagaaagt
gtggtcatctactacaagattagacagcagcttgccaaattgggtaaagaaattgaagaa
tacattcacaaaccaaaatattgcttaccctttctacagccaggtcgtttggtaaaggtg
aagaatgaaggagatgattttggttggggtgtagtggtgaatttctcaaagaaatcaaat
gttaagcctaattctggtgaactggatccgttatatgtagtagaagtacttctgcgctgt
agcaaagagagcttgaaaaattcagctactgaggctgcaaagccagctaaacctgatgag
aaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagcagtgtt
agactttacatccctaaagaccttcgaccactggacaatagacagagtgttctaaaatca
atacaggaagttcagaaacgttttcctgatggtgttcccttgttagaccctattgatgac
atgggcattcaggatcaaggactgaaaaaagttatccagaaagtagaggcctttgagcat
cgaatgtattctcatcctcttcacaatgatccaaatttggaaactgtgtatacactttgt
gaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaagaaagca
agaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggaggttggga
tttgctacatcttctgatgtcatagagatgaaaggacgagtagcttgtgagataagcagt
gctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctatctgca
gagcaagcaacagcactactgagctgctttgtgtttcaagagaattctagtgagatgccc
aaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaatt
gcaaaagtttcagcagaggccaaattggaaattgatgaggagacttacctaagctcattt
aaacctcacttgatggatgtagtgtacacctgggcgaccggcgccacatttgcccacatc
tgcaaaatgacggatgtctttgaaggcagcataattcgttgtatgaggcgcctggaagaa
ctacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaaaataaa
tttgcagaaggaatcaccaaaatcaagagagatattgtgtttgccgccagcctctactta
taa
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integrated database retrieval system
