Bison bison bison (American bison): 105003438
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Entry
105003438 CDS
T08726
Symbol
PABPC5
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
bbis
Bison bison bison (American bison)
Pathway
bbis03015
mRNA surveillance pathway
bbis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105003438 (PABPC5)
09123 Folding, sorting and degradation
03018 RNA degradation
105003438 (PABPC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbis03019
]
105003438 (PABPC5)
03041 Spliceosome [BR:
bbis03041
]
105003438 (PABPC5)
Messenger RNA biogenesis [BR:
bbis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105003438 (PABPC5)
mRNA cycle factors
Stress granule specific factors
105003438 (PABPC5)
Spliceosome [BR:
bbis03041
]
Complex C
Other components
Complex C specific factors
105003438 (PABPC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_10
RRM_3
Motif
Other DBs
NCBI-GeneID:
105003438
NCBI-ProteinID:
XP_010858918
UniProt:
A0A6P3IX34
LinkDB
All DBs
Position
Unknown
AA seq
382 aa
AA seq
DB search
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRTPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNR
ALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKG
FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDE
MNGRIVGSKPLQVTLGQARRRW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggggagcctaatcctgctggcaagaaaaagaagtacctcaaggctgccctg
tatgtgggtgacttggacccagatgttactgaggacatgttatataaaaagttcaggcct
gctggacctctgcgcttcactcgaatctgccgtgacccggtgacccgcacgcccctgggc
tatggctacgttaacttccgctttcctgcggatgctgagtgggcactgaacaccatgaat
tttgatttgattaatggcaaaccattccgtctaatgtggtctcagccagatgatcgctta
agaaagtctggaattggaaatatattcatcaaaaacctggacaaatccattgacaacagg
gcccttttttatctgttttcagcttttgggagcattctctcctgcaaagtcgtatgcgat
gacaatggctctaagggttatgcctatgtgcactttgacagcctggccgctgccaatagg
gccatctggcacatgaatggagtgcggctcaacaaccgccaggtgtatgttggccgattc
aaatttccggaagagagggctgctgaagttagaactagggataaagcgactttcactaat
gttttcgttaaaaactttggagatgacatggatgacgacaaactgaaggaacttttcagt
gagtatgggccaactgaaagcgttaaggtaataagagattccagtgggaaatcgaaaggc
tttggatttgtaagatatgagacacatgaggctgcccaaaaggctgtgttagatctgcat
ggaaagtccatcgatgggaaagtgctctatgtagggcgagcacagaagaaaattgaacgt
cttgctgagttaaggagaagatttgagcggctgagattaaaagaaaaaagtcggcctcca
ggggtgcctatctatattaagaacctggacgagaccattgatgatgaaaaactgaaggag
gaattttcttcctttgggtcaattagtcgggccaaagtgatggtggaggtggggcaaggc
aaagggtttggtgttatctgcttctcctcttttgaagaggctaccaaagcagtagatgag
atgaatggtcgcatagtgggctctaagcctctgcaagtcactctgggccaggccaggcgc
aggtggtga
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