Bison bison bison (American bison): 105004935
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Entry
105004935 CDS
T08726
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
bbis
Bison bison bison (American bison)
Pathway
bbis03015
mRNA surveillance pathway
bbis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105004935 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
105004935 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbis03019
]
105004935 (PABPC4)
03041 Spliceosome [BR:
bbis03041
]
105004935 (PABPC4)
Messenger RNA biogenesis [BR:
bbis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105004935 (PABPC4)
mRNA cycle factors
Stress granule specific factors
105004935 (PABPC4)
Spliceosome [BR:
bbis03041
]
Complex C
Other components
Complex C specific factors
105004935 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
105004935
NCBI-ProteinID:
XP_010861042
Ensembl:
ENSBBBG00000009395
UniProt:
A0A6P3JAF3
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAAPRAVAPY
KYASSIRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMH
SNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAAT
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccagctgacgctgagcgggccttggacaccatgaactttgatgtaattaagggaaag
ccgatccggatcatgtggtctcagagggatccgtctctgagaaaatctggtgtgggaaac
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttgggaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaggaggctgccgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gccgaacttggagccaaagccaaggaattcaccaatgtttacatcaaaaactttggggaa
gaggttgatgatgagaatctgaaagagctatttagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcactgggaaggtc
attttcgttggccgtgcacaaaagaaagtggagcggcaggccgagttaaagcgaaaattt
gaacagctgaagcaggagaggattagtcgctatcagggggtgaatctctacattaagaac
ttggatgacaccatcgatgacgagaagttaaggaaagagttttctccttttgggtcaatc
accagtgctaaggtgatgctggaggatgggagaagcaaaggatttggctttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcacagagatgaatggacgcatcgtgggctcc
aagccactttatgtcgctctggcccagagaaaggaggagagaaaggctcacctgaccaac
caatatatgcagcgggtggccgggatgagggcactgcccgccaatgccatcttaaatcag
tttcagcctgcagctgggggctactttgtgccagcagttccacaggctcagggaagacct
ccatattacacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgcggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcag
aacttagcgcctcgtgccgctgttgctgctgctgctgctcctcgggctgttgcaccttac
aaatatgcctccagcatccgcagtcctcacccggccatccagcccctgcaggcaccccag
cctgcggtccacgtgcaggggcaggagccgctgaccgcctccatgctggctgcagcaccc
ccccaggaacagaagcagatgctgggtgaacgtctgttcccactcatccagacaatgcac
tcgaacctggctgggaagataactgggatgctgctggagatcgacaactcagagctgctg
cacatgctggagtcccccgagtctctccgctccaaggtggatgaggctgtggcggtcctt
caggctcatcatgccaagaaagaagctgctcagaaggtgggcgctgttgctgctgctacc
tcttag
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integrated database retrieval system
