Borreliella burgdorferi JD1: BbuJD1_0388
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Entry
BbuJD1_0388 CDS
T02081
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbj
Borreliella burgdorferi JD1
Pathway
bbj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BbuJD1_0388 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbj03021
]
BbuJD1_0388 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbj03400
]
BbuJD1_0388 (rpoC)
Enzymes [BR:
bbj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BbuJD1_0388 (rpoC)
Transcription machinery [BR:
bbj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BbuJD1_0388 (rpoC)
DNA repair and recombination proteins [BR:
bbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BbuJD1_0388 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADQ30847
LinkDB
All DBs
Position
complement(397271..401404)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKEIKDFERIKIKIASPDQIRNWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSVRYKGIICDRCNVEVTHFKVRRERMGHIELAAPVAHIWYYKYIPSRIGLLLDI
TASSLNSILYYEKYVVIEPGDTDLKKMQLLNEDEYIEARERYGMSFNASMGAEAIKTLLE
NLDLDELSSKLRIQMIDKDDKTDKKLLRRLEIIENFKISGNKPEWMIMEVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGSSSRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPAK
MALELFKPFVIRRLIESEAVFNIKRAKNLIEQEVDEVWQILDLVIKEHPILLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPAAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMEKKNVVGEGKKFLNFNNVILAINNRSLDYNASIYVK
IDGEYKKTTAGRVIFNEALPKGIEFVNKTLSDLELQILISKVYVVHGSSTVIEMLDIIKE
LGFRYATKFGCTISMSDIIVPDEKRTYVERANKEIAKIQNDYAKGVITGEERYNNVVSVW
LKTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVETVKNGEEILESLKEKAVGSYSIERIKNPITGEIVLDANEEISEAKIELLEKIGI
EKLVIRSVLTCEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKISLKNAFILNGIEGFNVRVDNGILFTRKGTLKIINVFYEEKIKNIKEI
KVLDSQRVIKGIPLFIDKKGSEILSSYIGYVKLRDDNFFIVSEEQEVSLKAGTKLEIEVG
DYVESGKVIGTFDPFAEPIIAEVKGKIKFKDIILGTTLKEEINTETGNVEKRITDNVFES
LDPRIFIIDSSGMEVASYVLPGDAYLQVEDGQSINIGDIIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGIVQFKSIQKGKRLINILDEYGVEHKHYIPAGKHLLVRDGD
VVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVAVGDTNFVYGQKVDKHTFYEQNRKVIEQGGEPAIASPILIGVTKTSLNIDSFISA
ASFQETTKVLTDASIAGKIDDLRGLKENVVIGHLIPTGTGMGLYKKIKVSENIDSEV
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagataaaagattttgaaagaataaaaattaaaatagcgtctcctgatcaaatt
agaaattggtcttatggagaggttaaaaagtccgaaactattaactatagaactttaaga
cccgaaaaagatgggcttttttgtgaaaggatttttggtactacaaaggaatgggaatgt
tattgtggtaaatttaaatcggtcagatataaaggtattatttgtgatcgttgtaatgta
gaggttacccattttaaggttagacgtgaaagaatggggcatattgagctagcagcccca
gttgctcatatttggtattacaaatatataccctctaggattgggcttttgcttgatatt
acagcatctagtttgaattctattctttattatgaaaaatatgtagtaattgaaccgggc
gatactgatcttaaaaaaatgcagcttttaaatgaagatgagtacatagaagctagagag
cgatatggtatgtcttttaatgcttcaatgggagctgaggctattaaaactcttcttgaa
aatcttgatcttgatgagctttcgtctaagcttagaattcaaatgatagataaagatgat
aaaactgataagaaactcttaagacgtcttgaaattattgagaattttaaaatttctggc
aataagccagagtggatgattatggaagttcttcctgttattcctccagagattaggcca
atggttcagcttgatggggggcgctttgcaacatctgatcttaatgatctttatagaaga
gtcataaatagaaataatcgtttaagaaagttgcttcttcttaatgcgccagagattatt
gtgagaaacgaaaaaagaatgcttcaagaatcagtagactctctttttgacaattctcat
aaaagaaaggttgtcaaaggttcatctagtaggcctctcaagtcgctttccgatgcatta
aaaggtaagcagggaaggtttaggcaaaatcttcttggtaaaagagtagattattctggt
cgttctgttattgttgttggacctgagcttaagctacatcaatgtggattgcctgcaaaa
atggcccttgagctttttaagccttttgtgataagaagactgattgagagtgaagctgtt
tttaatatcaaaagagcaaagaatttaatagagcaagaagtagatgaggtgtggcaaatt
ttagatcttgttatcaaagagcatcctattcttttaaatagggcacccactcttcataga
cttggaattcaagcttttgaacctgtgttagttgagggtaaggcaataaaattacatcct
cttgtttgtcatgcatacaatgccgattttgatggtgatcaaatggcggtacatgtgcct
cttactccggcagcacaagctgaaagttgggctttaatgctttcaacaaataatctttta
aatcctgccaatgggcatcctattgtttttccatcccaagatattgttttgggcctatat
tatttaactatggaaaaaaagaatgttgttggagaaggtaaaaagtttttaaactttaac
aatgttattcttgccataaataataggagtctggattacaatgcttctatttatgtaaaa
attgatggtgagtacaaaaaaactacggccggtagggttatatttaatgaggctttgccc
aagggaattgaatttgtaaataaaacccttagtgatttggagctacaaattttaatatca
aaagtttatgtagttcatggttcttctaccgtaattgaaatgcttgacatcatcaaggaa
cttggttttaggtatgccactaagtttggatgcacaattagtatgagcgatattattgtt
cctgatgaaaaaagaacttatgtagaaagggccaataaagagattgctaagattcaaaat
gattatgctaaaggtgttattactggcgaagagcgttataacaatgtagtttctgtttgg
ttaaagaccaatgaagaacttactaataagatgatggaaattttaaagaaagatagagat
ggatttaatgttatatatatgatggcagattctggtgctaggggtagtaggaatcaaata
agacagcttgctggtatgagaggattgatggcaaaaacttctggggatattattgagctt
ccaattatttctaactttaaagaaggtctttctgtgatagagttttttatatctacaaat
ggagcaagaaaaggtctagcagatactgctcttaagaccgctgatgctggatatttaact
cgaagattagtagacattgctcaagatgttgttgttagaatagaggattgtggaactata
aatggaataaaagttgagactgtaaaaaatggtgaagaaatattagaatctttgaaagaa
aaagctgttgggagttattctattgaaagaataaaaaatccaattactggcgagattgtt
ttagatgcaaatgaagaaatctcagaagctaaaatagaattattagagaaaattggtatt
gaaaaacttgttattagatctgttttaacgtgtgaagctgagcatggcgtttgtcaaaaa
tgttatggtagagacttttctaagaacaaacctgttaatattggggaggctgtgggaata
attgctgctcagtccataggtcaaccgggtactcaattaaccatgagaacttttcatatt
ggtggagttgctcaggctggcagtgaggatgataaaatatctttaaagaatgccttcata
ctcaatggcatagaaggttttaatgttagagttgataatggaattcttttcacaagaaaa
ggaactttaaaaataatcaatgttttttatgaggaaaaaattaagaacataaaagagatt
aaagttttagattctcaaagagtaataaaaggaattcctttgtttattgataaaaagggc
tcagagattctctcttcttacattggttatgttaaattaagagacgataattttttcata
gtgtcagaagagcaagaagtttccttgaaagcgggtacaaagcttgaaatagaggttggt
gattatgttgaatcaggcaaagttattggtacatttgatccatttgcagagcctattatt
gcagaggttaagggtaaaattaaatttaaggatattattttaggaactactcttaaagag
gaaataaatactgaaacaggcaatgttgaaaaaagaattacagataatgtttttgaatct
cttgatcctagaatttttattattgatagtagtggtatggaggttgcatcttatgtatta
ccaggtgatgcttatcttcaagttgaagatggccagagtattaacataggagatattatt
gcgaaactttctaaaggttctgaaaaaactcaagatattacagggggattgcctcgtgtt
aatgatctttttgagacaagaattcctaagaatttaactgaaatggctaaagtaagcgga
attgtacaatttaaatcaattcaaaaaggtaaaaggcttattaatattttagatgagtat
ggggttgaacataagcattatattccagctggaaaacatcttttggttagagatggggat
gttgtaaaagcaggagatatgctttgtgatggtagaattaatcctcatgatgtgcttgaa
attttaggtgggattagtttacaagaatttctgttggcagaaattcaggatgtttatcga
aaacagggtgttagcattaatgacaaacatattggtgtgataatcaagcaaatgatgaaa
aaagttaagattgttgcagttggtgatactaattttgtttatgggcaaaaggtagataag
cacactttttatgagcaaaatagaaaagtaatcgaacaaggtggtgagccagcaatagca
agtccaattcttataggagtaactaaaacgtctcttaatatagattcttttatttccgca
gcttctttccaggaaacaacaaaagtattaacagatgcttctattgctggaaaaatagat
gatcttaggggattaaaagaaaatgttgtaattggacatttaattcctactggaactggt
atgggtctttataaaaaaattaaagttagtgaaaatatcgattctgaagtttaa
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