Bartonella bacilliformis: BARBAKC583_0572
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Entry
BARBAKC583_0572 CDS
T00456
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbk
Bartonella bacilliformis
Pathway
bbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BARBAKC583_0572 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbk03021
]
BARBAKC583_0572 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbk03400
]
BARBAKC583_0572 (rpoC)
Enzymes [BR:
bbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BARBAKC583_0572 (rpoC)
Transcription machinery [BR:
bbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BARBAKC583_0572 (rpoC)
DNA repair and recombination proteins [BR:
bbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BARBAKC583_0572 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ABM45019
UniProt:
A1USC9
LinkDB
All DBs
Position
582204..586415
Genome browser
AA seq
1403 aa
AA seq
DB search
MNHEVMNLFNPQALAQIFDSIRISIASPENILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERILYFESYIVTEPGLTSLKLHQLLSEEEYMLAIDKFGEDQFTA
MIGAEAIYDLLAGMELDKIANDLHAELAETTSELKQKKLIKRLKIVENFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMAFADMGELHHALE
NKVVTLHTKIKGRFKNIDKDGKEVAQLYDTTPGRLIIGELLPKNPNISFDIVNQEMTKKN
LSKMIDQVYRHCGQKETVVFCDRIMQLGFSHACRAGISFGKDDMVIPESKSRLVAETEAL
VKEYEQQYDDGLITQGEKYNKVVDAWGKCTDRIADEMMKGIQAVKFDPKTGRQQRMNSIY
MMSHSGARGSANQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTIKGLTMQPIIDAGQIVASLGQRILGRT
ALLDILHPVSGEVIIEGGTMIEEADVLKIEEARIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSYFESSYEGIVELRNRN
VVRNSEGHLVVMGRNMAVLIKDENGKERAVHRISYGARLFVDDGDIIKRGQRIAEWDPYT
RPILTEVDGYVGFEDMVDGLSVTETTDESTGITKRQVIDWRVNPRGADLKPAMIIHSDKQ
GKNIAKLHKGGEARYVMSVETILSVEPGSHVKAGDVIARLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEISGTVRFGRGYKNKRRIIIEPNDETLEPVEYLIPKGKLFHLQEGDK
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITESGDSDYIPGDNVDRIELDEINDHLIAEGKKPASGTPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIATVRDDLIVDEQ
RKSSNDGISKAMLTDMTANAAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaggttatgaatcttttcaatcctcaagcgctagcacagatatttgactct
attcgtatatcgattgcgagtcctgaaaatattctatcctggtcgtacggtgagatcaaa
aagccagaaactattaattaccgtacgtttaaaccagagcgcgatggtcttttttgtgcg
cgtatatttggccctattaaagactatgaatgtctttgtggcaaatataaacgtatgaaa
tacaaaggcattatttgtgaaaaatgtggtgtagaagttaccctttcgcgagtacgccgt
gagcgcatggggcatattgagcttgcagcgccagttgctcatatttggtttcttaaatca
ctaccaggccgcatatctactcttttagatttaactttgaaggatattgaaaggattctg
tattttgaaagttatattgtaacagaacccgggttaacatctcttaagctacaccagctt
ctttctgaagaagaatatatgcttgctattgataagtttggagaagatcaattcacggcg
atgattggtgctgaggctatttatgatcttctcgctgggatggagttagataaaattgcg
aacgatttgcatgctgaattagcagaaacgacttcagagttaaagcaaaaaaagctcatt
aagcggcttaaaattgttgaaaattttcttgaatctggtaataaaccagaatggatgatt
atgaaaacaattccggttattccaccggatttacgtccgctggttccgcttgatggtgga
cgttttgcaacatcggatttaaatgatctctaccggcgtgttataaatcgtaataatcgt
ttgaagcggcttattgaattgcgtgctcctggaattattgtgcgtaatgaaaaacgtatg
gtgcaggaagctgttgatgcgttatttgataatggccgccgtggccgtgtgattacaggg
gcaaataagcgtccattaaagtcactttcagatatgctgaagggtaaacagggacgtttc
cgtcaaaatttacttgggaagcgtgttgattattcaggtcgttctgttatcgtgacggga
cctgaattgaagttgcatcaatgcggtcttccgaaaaagatggctcttgagttgttcaag
ccatttatttatgcgcggcttgatgcaaagggctattcatccactgtgaagcaggcaaag
aagcttgttgaaaaagaacatccagaagtttgggatattttggatgaagttattcgtgaa
catcctgttttgcttaatcgtgcgccgacacttcaccgtttggggattcaggcctttgag
cccgtgttgattgaggggaaagcaatacaacttcatccactcgtttgtactgcttttaat
gcagattttgatggtgatcagatggcggttcacgttccgctttcgcttgaagcacagctg
gaagctcgtgttttgatgatgtcgactaataatattcttcatccagccaatggtgcgcca
attattgttccatcgcaagacatggttcttggtctttactatctttcgattgtttctgaa
aaagaaccaggagaggggatggctttcgctgatatgggtgagctacatcacgctttggag
aataaagtcgtaactcttcatacgaaaattaaaggtcgttttaaaaatattgataaagat
ggaaaagaagttgctcaactctacgatacgacgcctggtcgtttaattattggtgaattg
ttgccaaaaaatccaaatatttcgtttgatatcgtcaatcaggaaatgaccaaaaagaat
ctttctaagatgattgatcaagtttatcggcattgtgggcaaaaagagacagttgttttc
tgtgatcgtattatgcaacttggtttttctcatgcatgtcgtgctgggatttcatttggt
aaagacgatatggttattcctgagagtaagtcacgtctggttgcagaaacggaagctttg
gttaaagaatatgaacagcaatatgatgacggtttaattacacaaggtgaaaagtataat
aaggttgttgatgcgtggggtaagtgcactgatcgtattgcagatgaaatgatgaagggg
attcaagctgttaaatttgatcctaaaacaggtcgtcagcagagaatgaattcgatttat
atgatgtcgcattctggtgcacgtggttctgctaatcagatgagacagttagctggtatg
cgtggattgatggcaaagccatcaggtgaaattattgaaacaccaatcatttccaatttt
aaggaaggtctgactgttaatgagtattttaactcaacgcatggtgcgcgtaaggggctt
gctgacactgcgttgaaaactgctaactcaggttatttaacacggcgtcttgttgacgtt
gcccaggatgctattatttcagcagttgattgtggtactattaaggggcttaccatgcag
ccaattattgatgcaggacaaattgttgcatcacttggtcaaagaattcttggtcgtaca
gcacttcttgatattttgcatccagtttctggtgaagtcattattgagggagggacaatg
attgaggaagctgatgttcttaaaattgaagaggctagaattcaatcagttcagatccgt
tctgctttgacatgtgagacgcgtcttggtgtttgcgctaaatgctatggtcgtgatttg
gcacgtggaacaccggttaatcagggtgaagcggttggtgttattgcagctcaatcgatt
ggtgaaccaggaacacagcttactatgcgtactttccacttaggtggaacagcgcaggtt
gttgactcatcttattttgaatcctcttatgaaggtatagtagaacttcgtaatcgcaat
gttgttcgcaattctgaagggcatttggttgtgatgggacgcaatatggctgttcttatc
aaagatgaaaacggtaaagagcgtgctgttcatcgtattagctatggtgcgcgtctcttt
gttgatgatggtgatattattaaacgtggtcagcgtatagctgagtgggatccttacact
cgtccgattctaactgaagttgatggttatgtggggtttgaagatatggttgatggttta
tcagttactgaaacaactgatgaatcgacaggaattacaaaacgtcaggtgattgattgg
cgtgttaacccacgtggtgctgatctaaaaccagcaatgattattcactcagataaacaa
ggtaagaatattgctaaattgcacaaaggaggagaagcccgttatgtgatgtcagtggaa
actattctttctgttgaacctggttcgcatgttaaggcaggcgatgttatcgcacgctta
ccaatggaaagcgccaagacaaaagatattacaggtggtttgccgcgtgtagctgagctt
tttgaagcacggcgtccaaaggatcatgctatcattgctgaaattagtggtacggttcgg
tttggtcgtggttacaagaataagcgtcgtattattattgagcctaatgatgagacactt
gaaccagtagaatatttgatcccaaagggtaagttgttccatctgcaagagggtgataaa
attgaaaaaggtgattatatcttagatggtaatccagcacctcatgatattttggcgatt
aaaggtgttgaagctttggcatcttatctggttaatgaaattcaggaagtttatcgtttg
cagggtgttttgattaatgataaacatattgaagtcattgttcgtcagatgttgcaaaag
gttgaaattactgaatcaggagattctgattatattccaggtgacaatgttgaccgcatt
gaattagacgaaattaatgatcatttgattgcagaaggtaaaaaacctgcttctggtact
cctatacttcttggaattacgaaagcatctcttcagacaccgtccttcatttcggcagca
tcatttcaggagacaactcgggttcttactgaagcagcggtttctggcaaaattgatact
ttacaagggcttaaggaaaatgtcatcgtcggtaggcttattcctgcaggtacgggtggt
acaatcgctcaaattcgtcgtattgctactgttcgtgatgatttgattgtagatgaacag
cgcaaatctagcaatgatggaatatctaaagctatgttaacagatatgacagcaaatgcg
gccgctgaataa
DBGET
integrated database retrieval system
