Bartonella bacilliformis: BARBAKC583_0798
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Entry
BARBAKC583_0798 CDS
T00456
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbk
Bartonella bacilliformis
Pathway
bbk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BARBAKC583_0798 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbk03400
]
BARBAKC583_0798 (mfd)
Enzymes [BR:
bbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BARBAKC583_0798 (mfd)
DNA repair and recombination proteins [BR:
bbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BARBAKC583_0798 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABM45403
UniProt:
A1USY7
LinkDB
All DBs
Position
810524..814015
Genome browser
AA seq
1163 aa
AA seq
DB search
MPIFEKILFPNNQNDLIILDGIIDGVEAFALAQLSTEIAQGKPLVYVVRDETKIAHLQQA
LSFIEPNLPVLHFPAWDCLPYDRVSPAITITARRLSVLAHISTLRNNPHPAIIVTTANAI
IQRLPPCAMIDNQILHVRVGQRVDMDHLIHYLERNNFERVGIVRDVGEFAVRGGIIDIFS
PSEVEPSRLDFFGDTLETIRVFDTETQRTIKNRTDFFLQSMSEVILTPELISRFKRNYIS
TFGVPQKNDTLYEALSQGRRVAGMEHWLPFFYEKLDNFFDYCGNFPIIFENLIQEALIER
YRLIEDYYADRKEHENDKESDVSYHPVEPHLLYMRLEEVLECAQRSGQRIDFTPFNVPKT
SEQITVFHANVIPGYDFVKERNAQDKNIFLSVVDHISSLQSAGKKILLACWSEGSMDRLL
QVLDEYGLKKVEIAKSLSTVKTSSSHSIFAAVITIDHGFESEDFVIITEQDILGDRLVRS
SKQRKRNANFISEISTLNSGDFVVHIDHGVGQFIGLKTIMTAGILRDCLEISYAGGDRLF
LPVENVELLSRYGSEDTDVTLDKLGGVAWQARKTRFKKHLLQIAGQLICIAAERAMRSAP
ILTPPVSLFDEFVARFPYEETEDQMSAIDAVLDDLEAGKPMDRLICGDVGFGKTEVAIRS
AFVAALNGYQTAVVVPTTLLSRQHYKTFIARFQGLPVKIGHVSRLVKAAELTKVKKGISD
GTIDIVVGTHALLSGSVNFSRLGLLIIDEEQHFGVKHKEHLKELKSDIHVLTLSATPIPR
TLGLALSGVRELSLITTPPIDRMAVRTFISPFDALVIRETLLREYYRGGQSFYVCPRISD
LSYVEEYLKKHVPELKFVIAHGQMPAGQLDDIMNAFYDGKYDVLLSTTIIESGLDIPTAN
TLIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPSNKVLTTAAQRRLKILQSLDTLGA
GFQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVSELKEGKHNEDLQWSPQI
SVGTTVLIPENFVPDLSLRMSLYRRLMALENLEEINELGAELIDRFGPLPLEVQHLLKIV
YIKALCRKARVEKLDVGPKGVIIQFRNNHFNNSAALVQWIGEQGSMAKIRPDQTIVFIRD
WQTADKRLLGAETIVTKLTEMIQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcctatatttgaaaaaatcctttttcctaacaatcaaaatgatttaataattcttgat
ggaattatcgatggagttgaggcttttgctcttgctcaattaagtacagaaattgctcag
ggtaaaccacttgtttatgtagttcgtgatgaaacaaaaattgctcatttacagcaggct
ttaagttttattgagcccaatttacctgttcttcattttcctgcgtgggattgtttacct
tatgatcgtgtatcgcctgcaataactattactgcccgtaggctttcagttctggcacat
atatcgactttacgtaataatccccatcctgcgattatagtgacaacagcaaacgcaatc
attcaaagattgccaccatgcgcaatgattgataatcagattcttcatgtacgtgttggt
cagcgtgttgatatggatcatttgatccattacttagaacgtaataattttgaacgtgtt
ggaattgtgcgcgatgtcggtgaatttgctgtaagaggaggaattattgatattttttct
ccaagcgaagttgaaccttcacgtcttgatttttttggcgataccttagagacaatccgt
gtatttgatacagaaacgcaacggacaataaaaaatagaactgatttttttctgcaatca
atgagtgaggttatcctcacaccggagctcatcagtcgttttaaaagaaattatatcagt
acatttggtgtaccacaaaaaaatgatacactctatgaagccctttctcaaggaagacgt
gttgctggcatggagcattggttaccatttttttatgaaaagctcgataatttttttgat
tattgtggtaattttcctattatttttgaaaatcttatacaagaagctctgattgaacgt
tatcgtcttattgaagattattatgctgaccgcaaagagcacgaaaatgataaagaaagt
gatgtttcttatcatccagtagaaccacatctactgtatatgaggctagaggaagtttta
gaatgtgcacaacgatccggtcaacgtattgattttacgccttttaatgtcccaaaaact
tctgaacagataacggtttttcatgcgaatgttattccagggtatgatttcgtaaaagag
cgtaatgcacaagataaaaatatttttttgagcgtggttgatcatatttcttcattgcaa
tctgctggtaaaaaaattctcttagcctgttggagcgaaggatctatggatcgcttattg
caagtgctcgatgaatatggattaaaaaaagtagaaattgcaaaatcattaagcactgta
aaaacaagttcatctcattctatatttgcagctgttataacgattgatcatggttttgaa
tctgaagattttgttattataacagaacaagatattcttggtgatcgattagtaagatct
tcgaaacagcgtaaacgcaatgcgaattttatttctgaaatttctacattaaattctggt
gattttgttgttcatattgatcacggtgttgggcaatttattggtctcaaaaccattatg
acagccggaattttacgtgattgtcttgaaatcagctatgctggaggtgatcgattattt
ttgcctgttgaaaatgtagaacttttatcacgttatggatcagaagatacagatgtaaca
ttagataagctaggcggcgttgcttggcaagcacgtaaaacacggttcaaaaagcattta
ttgcagattgctgggcaattaatctgtatagctgcagagcgcgctatgcgttctgctcct
attttgactccaccggttagcctatttgatgaatttgttgcacgctttccttatgaagaa
acagaagatcagatgagtgcaattgatgcggttttggatgacttagaagcaggaaaacca
atggatcgtctcatatgtggtgatgttggttttggtaaaacagaagttgctattcgaagt
gctttcgttgctgcgttgaatggttatcaaactgccgttgttgtgccaacaactttacta
tcacggcagcattacaagacttttattgcacgttttcaaggattacctgttaaaattggt
catgtttcaagacttgtaaaagctgcagaattgaccaaagtgaaaaaggggatctcagat
ggtacaatcgatatcgttgttggaacgcatgcgttattgagcggatcagttaatttttca
cgattagggttattgatcatcgatgaagagcagcactttggtgtaaagcacaaagagcat
ctcaaagagcttaaaagtgatattcatgttcttacactttcagcaacccctataccaaga
actttaggacttgccttatcaggggtgcgtgaactctcattaattacgactccacctatt
gatagaatggcagttcgtacttttatttcaccttttgatgcgcttgttatacgcgaaaca
ttgctgcgtgagtattatcgtggaggacagagtttttacgtttgtcctcgtatttctgat
ctttcttacgtggaagaatatctcaaaaagcacgtacctgaactcaaatttgttatagcc
catggacagatgccagctggacagcttgatgatattatgaatgcattttatgatggaaaa
tatgatgtactgctttccacgacgatcattgaatcagggcttgatattccaactgctaat
acattaattgtgcatcgtgctgagatgtttggtctctctgcactttatcaattacgggga
agggtgggacgttccaaacaacgcgcttatgcactttttacttttccatctaataaagtt
ttaacgactgctgctcagcgtcgtcttaaaattttgcaatctcttgatactttaggagca
gggtttcaattggctagtcatgacatggatattcgtggttcaggtaatttcctaggcgaa
gaacagtcaggacatattaaagaagttggatttgagctttatcaaaaaatgcttgaagag
gccgtttctgagttaaaagaaggaaaacataatgaagatcttcaatggtcacctcaaatt
tcagtaggtacaacagttttaataccagaaaattttgtccctgatttatcattacgtatg
agtctttatcgccgtttaatggcgcttgagaatttagaggaaattaatgaattaggagct
gaattgatcgatcgttttggtcctcttccattagaagttcaacatctacttaagattgtt
tatatcaaagctttatgtcgaaaagcacgtgtagaaaaattggatgttggacccaaaggt
gttatcattcagtttcgcaataatcattttaacaacagtgctgctcttgttcaatggatt
ggagaacaaggttcaatggcaaaaatccgaccagatcaaactattgtttttattcgtgat
tggcaaacagcagataaaagactattgggagcagagaccattgtgacaaaacttacagaa
atgatacaataa
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integrated database retrieval system
