Bordetella bronchiseptica MO149: BN115_3060
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Entry
BN115_3060 CDS
T02295
Symbol
vacB
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bbm
Bordetella bronchiseptica MO149
Pathway
bbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN115_3060 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbm03019
]
BN115_3060 (vacB)
03016 Transfer RNA biogenesis [BR:
bbm03016
]
BN115_3060 (vacB)
Enzymes [BR:
bbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BN115_3060 (vacB)
Messenger RNA biogenesis [BR:
bbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN115_3060 (vacB)
Transfer RNA biogenesis [BR:
bbm03016
]
Prokaryotic type
tRNA degradation factors
BN115_3060 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
HTH_20
HVO_A0261_N
MarR_2
Rrp44_S1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
CCJ59816
LinkDB
All DBs
Position
complement(3318815..3321235)
Genome browser
AA seq
806 aa
AA seq
DB search
MPADFDPDVPSREAILTALRSAGAPLSPAELAERMGVERPATLVGFERRLGAMERDGQLL
PNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGPDIFLSPREMLKVLHGDRVLVKPS
GEYRGKPEGAIVEVIERRTNKLVGRFLHEHGLSIVVPEDQRIKHDILIPPSDTNGAQHGQ
VVSVQIMEQPTRHTQPLGRVYEVLGEIDDPGMEIEIAVRKFDVPVDFSEPANKQAARLPD
SVRKTDLKQRVDLRDVPLITIDGEDARDFDDAVYCEPVELGTGQRKRPAWRLLVAIADVS
NYVRPNDALDDDAYERGTSVYFPRRVIPMLPEVLSNGLCSLNPNVDRLVLVCDMVIPATG
AKAGTVTAYQFYNAVMHSHARTTYTSIWEALQQPGGPAAAALGAIMPHVRHLHELYQLLS
QQRRKRGAIDFDTVETRIVCNELGRIEQIVPMVRNDAHKLIEECMLAANTCAADFMSRSK
HPGLYRIHEGPTPERLQSLRDFLRTMGLSLGGGDEPTAKDYGEFLDSVRGRPDYPLLQTM
CLRSMQQAIYSPDNLGHFGLAYPAYTHFTSPIRRYPDLLTHRVIKALLEGQRYMPELEDQ
PIVIGRSQREHEHAVWEKLGLILSGSERRADEASRDVEAWLKCWFVKERVGEDFSGTVTG
VASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRGERTGMRYRLTDKVQVQVSRV
DLEARRIEFRLVKGTSFDALRKAAARGPDEGRRVKKAAAPKPAALKGQTAKQRRAEAKQA
SKPANTPKAAKSAGASAQKKPARARH
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgccgacttcgaccccgatgtcccttcacgcgaagccattctgacggcgttgcgg
tcggccggggcgccgttgtcgccggccgaactggccgaacgcatgggcgtggaacggccc
gcgacgctggtcggcttcgagcgccggctcggggcgatggagcgcgacggtcaattgctt
cccaaccgcaagggtgtgctgctgctggccaccaagctggatttcgtggccggccgcgta
cagggccaccgcgatggcttcggcttcctggtgcgggatgacggcgggcccgatattttc
ctgtcgccgcgcgagatgctcaaagtgctgcacggcgaccgcgtcctggtcaagccgtcg
ggcgagtaccgcggcaagccggaaggcgccatcgtcgaggtcatcgagcggcgcaccaac
aaactggtgggccgcttcctgcacgaacatgggttgtccatcgtcgtgccggaagaccag
cgcatcaagcacgacattctcattccgcccagcgacaccaacggcgcccagcacgggcaa
gtggtgtcggtgcagatcatggagcagcccacccgccatacgcagccgctgggccgcgtg
tatgaggtgctgggcgagatcgacgatcccggcatggaaatcgaaatcgcggtgcgcaag
ttcgacgtgccggtcgatttttcggagcccgcgaacaagcaggccgcgcggctgccggac
tcggtgcgcaagaccgatctgaagcaacgcgtcgatctgcgcgacgtgccgctgatcacc
atcgacggcgaggacgcgcgcgatttcgacgacgcggtgtactgcgagccggtcgaactg
ggcaccggccagcgcaagcggccggcctggcgcctgctggtggccatcgccgacgtcagc
aactatgtgcggcccaacgacgcgctcgatgacgatgcctacgagcgcggcaccagcgtg
tatttcccgcgccgcgtgattccgatgctgcccgaggtgctgtccaacgggctgtgctcg
ctcaaccccaatgtcgaccgcctggtgctggtgtgcgacatggtgatcccggcgaccggc
gccaaggccggaacggtgacggcctaccagttctacaacgcggtgatgcattcgcatgcg
cgcaccacgtacaccagtatctgggaggcgctgcagcagccgggcggcccggctgccgca
gcgctgggcgccatcatgccgcatgtgcgccacctgcacgagctgtaccagctgctgtcg
cagcagcggcgcaagcgcggcgccatcgatttcgacaccgtcgagacgcgcatcgtctgc
aacgaactgggccgtatcgaacagatcgtgcccatggtgcgcaacgatgcccacaagctg
atcgaagaatgcatgctggcggccaacacgtgcgctgccgatttcatgtcgcgcagcaag
caccccggcctgtaccgcatccatgaaggccccacgcccgagcgcctgcagtccctgcgc
gatttcctgcgcaccatgggcctgtcgctgggcggcggcgacgagcccaccgccaaggac
tacggcgagttcctcgattcggtgcgcgggcgccccgactacccgctgctgcagaccatg
tgcctgcgctccatgcagcaggcgatctacagcccggacaatctcggccacttcgggctg
gcgtatcccgcctatacccatttcacttcgccgatccgccgttatcccgacctgctgacc
caccgcgtgatcaaggcgctgctcgaaggccagcgctacatgccggagctggaagaccag
cccatcgtcatcgggcgctcgcagcgcgagcacgaacacgccgtatgggagaagctgggg
ctgatcctgtcgggcagcgaacggcgcgccgacgaggcttcgcgcgatgtcgaagcctgg
ctgaagtgctggttcgtcaaggagcgcgtcggcgaggatttcagcgggacggtgacgggc
gtggccagcttcggcattttcgtgaccctggataccttgcacgtcgaggggctggtgcac
gtctcggaactgggcggggagtatttccagttcaacgatgccttgcacgaactgcgcggc
gagcgcaccggcatgcgttaccgcctgacggacaaggtgcaggtgcaggtgtcgcgcgtg
gacctggaagcgcgccgcatcgagttccgcctggtcaagggcaccagcttcgacgcgctg
cgcaaggccgccgcgcgcggtcccgacgaggggcgcagggtcaagaaggcggcggctccc
aagccggcggccctgaaggggcagaccgccaagcagcggcgcgccgaggccaagcaggcc
agcaagccggccaatacgcccaaggcggccaagagcgccggcgcgtcagcccagaaaaag
ccggcgcgcgcacgccattga
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