Bordetella bronchiseptica MO149: BN115_3188
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Entry
BN115_3188 CDS
T02295
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bbm
Bordetella bronchiseptica MO149
Pathway
bbm03030
DNA replication
bbm03430
Mismatch repair
bbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN115_3188 (dnaE)
03430 Mismatch repair
BN115_3188 (dnaE)
03440 Homologous recombination
BN115_3188 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbm03032
]
BN115_3188 (dnaE)
03400 DNA repair and recombination proteins [BR:
bbm03400
]
BN115_3188 (dnaE)
Enzymes [BR:
bbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN115_3188 (dnaE)
DNA replication proteins [BR:
bbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BN115_3188 (dnaE)
DNA repair and recombination proteins [BR:
bbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BN115_3188 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
CCJ59944
LinkDB
All DBs
Position
complement(3477335..3480826)
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK
GARGAGVKPVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCELLTRSFLENQYKGRAE
VRREWLQGQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPGSYYIELQRAGFD
GDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEILANPRRVRRYTQ
DQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTPDGVTLDDYLVQL
SEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNG
VPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVI
DYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDALSKLIPFNPADPWTLER
TLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLIAPGKLTDFCPLYCQPG
QENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFNADKRDFDVMALSLDDQ
AAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALYRPGPLESGMVDDFVNR
KHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEE
MAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHP
TEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRFEPVADKHTEQGKPPRT
MRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAVNRRTIEALIKAGAFDT
IEPNRAAMLASVGTAMEAAEQAARSANQSSLFGDDSGDVVAGELTKVAPWNLHTTLTEEK
TALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQWMCGVLAGVRTMMTRRGKMVFAV
LDDGTAQIEISVFNELYEKHRGRLREDQLLVVQGKVSNDEYSGGMRIVAEQLYDLQLARE
ARAKSLRIRLNGQADAARLRQLLNPFRAEPENGVPGVPVDVVYRRNNFLCTVRLGEDWRV
RMADTLLENLNDWAKPDGVEVTY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagccgtaacaaatccgcccccatttgtacatttgcgcgtccattccgagttc
tccgtctcggatggcatcgtgcgtatctccgatctgatcaagcgcgtggccaagctgggc
cagccggccgtggcgctgacagacctgtcgaacatcttcggcctgatcaagttctacaag
ggcgcgcgcggcgccggggtcaagccggtggccggcagcgatgtctggctgaccaacgac
gatgaccgcgaaaagccgttccgtctcctgctgctggtgcgcaaccaccagggctacctc
aacctgtgcgagctgctgacgcgctcgttcctggagaatcagtacaaggggcgcgccgag
gtgcgccgcgaatggctgcagggccaggaagggctgatcgtgctgtcgggcgcgcgcggc
ggcgacgtcggccaggcgctggaagccggcaatgccgtcacggcgctgtcgctggcgcgc
cagtggggccagctgttcccgggttcgtactacatcgaattgcagcgcgccggcttcgac
ggcgacgaaacctatacccaggccgccatgcggctggccgccgaggcggggctgccggtg
gtggccacccatccggtgcagttcctggaccgcgacgagttccaggcgcacgaggcgcgc
gtgtgcatcgccgaaggcgagatcctcgccaatccgcggcgggtgcggcgctacacgcag
gaccaatacctgctcagttccgaggagatggcgcgccgcttcgccgacgtgccctcggcg
ctggccaatacggtcgagatcgcgcggcgctgcaacctgaccctggtgctgggcaagccg
cgcctgccgaacttccccacgccggacggcgtgacgctggacgactacctggtccagctg
tccgaggaaggcctggaaaagcgcctgcagttcctgttccccgacgaggccgagcgcaac
gccaagcgcgaccagtactacgaacgcctgcgctgggagtgcaagaccatcatccagatg
ggctttcccggctacttcctgatcgtgcaggacttcatcaactggggcaagaacaacggc
gttccggtcgggccggggcggggctcgggcgccggctcgctggtggcctacgcgctgggc
attaccgacctggatccgatccgctacgacttgctgttcgagcgcttcctgaatccggag
cgggtgtcgatgcctgacttcgatatcgacttctgccaggacaaccgcgaacgggtcatc
gactacgtcaagatgaagtacgggcgcgaggcggtcagccagatcgccaccttcggcacc
ctgggcgccaaggcggtggtgcgcgacgccggccgcgtgctggacatgccctacctgttc
tgcgatgccctgtccaagctgatcccgttcaacccggccgacccgtggacgctggagcgc
acgctcaaggacgagccggccttcaaggaccgctacgagcaggaagaggaagtgcgcgcc
ctggtcgacctggcgcgcccgctcgaaggcctgacgcgcagcatcgggatgcacgccggc
ggggtgctcatcgcgccgggcaagctgaccgatttctgcccgctgtattgccagcccggc
caggagaacagcgcggtctcccagttcgacaaggacgacgtcgaggcggccggcctggtg
aagttcgacttcctgggcctgcgcaacctgaccatcctggactgggcggtgcgcttcgtg
cgccagttcaatgccgacaagcgcgacttcgacgtcatggccctgtcgctggacgaccag
gccgcgtacaaggtgctgtgcgacgccaacacgaccgcggtgttccagcttgaatcgcgc
ggcatgaaagagctgctcaagaagctgcgccccagcactttcgaagacatcatcgccatg
ctggccctgtaccggccggggccgctcgaatccggcatggtggacgatttcgtcaaccgc
aagcacggccgcgccgcggtcgattatttccacccggacctggaaggcaccctgcgcagc
acgtacggggtcatcgtctaccaggaacaggtgatgctgatctcgcagatcatcggcggc
tactcgctgggcggcgccgacctgctgcggcgcgccatgggcaagaaaaagcccgaggaa
atggccaagcaccgcgaactgttcgagcagggcgcgcgcgagaaggggcatgatcccgac
ctggcggtcaagctgttcgacctgatggagaagttcgcgggctacggcttcaacaagtcg
cactcggccgcctatgcgctgatcgcctaccagaccgcatggctgaaggcctaccatccc
accgagttcctggccgccacgctgtcgtccgacatggacgataccgacaaggtgcagatc
ttcgtgcgcgacgcccaggacaacggcgtcgaggtgctgccgcccgatgtcaacgcctcg
ggctatcgcttcgaaccggtggcggacaagcacaccgagcagggcaagccgccgcgcacc
atgcgctacggcctgggcgcggtcaagggcaccgggcagggcgcggtcgaggaaatcctg
cgcgcgcgccaggagggcggcccgttcgccaacctgttcgatttctgccgccgcgtcagc
aagcacgcggtcaaccggcgcaccatcgaggccctgatcaaggccggcgcgttcgatacc
atcgaacccaaccgcgccgccatgctggcctcggtcggtacggcgatggaggcggccgag
caggccgcgcgcagcgccaaccagtcgtcgctgttcggcgacgacagcggcgacgtggtc
gccggcgagctgaccaaggtcgcgccctggaaccttcacaccacgctgaccgaggaaaag
accgcgctgggctattacttcagcggccacctgttcgacgcctggcgcgacgaggtgcgc
cgcatcgtgcccatgcagctggcgcgcctggagccgcagcgcgacctgcaatggatgtgc
ggggtgctggccggcgtgcgcaccatgatgacgcggcgcggcaagatggtgttcgccgtg
ctcgatgacggcacggcgcagatcgagatctcggtgttcaacgagctgtacgagaagcac
cgcggccgcctgcgcgaagaccagttgctggtggtgcagggcaaggtcagcaacgacgag
tactccggcggcatgcgcatcgtggccgagcagctgtacgacctgcagctggcgcgcgag
gcgcgcgccaagtcgctgcgcatccggctcaacggccaggccgacgcggcgcgcctgcgc
cagctgctcaacccgttccgggccgagcccgagaacggcgtgcccggcgtgccggtcgac
gtggtctaccgcaggaacaatttcctgtgcacggtgcggctgggcgaagactggcgcgtg
cgcatggccgacacgctgctcgagaacctgaacgactgggccaagcccgacggcgtcgag
gtcacctactga
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