Bordetella bronchiseptica MO149: BN115_3441
Help
Entry
BN115_3441 CDS
T02295
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbm
Bordetella bronchiseptica MO149
Pathway
bbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN115_3441 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbm03019
]
BN115_3441 (rne)
03009 Ribosome biogenesis [BR:
bbm03009
]
BN115_3441 (rne)
Enzymes [BR:
bbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN115_3441 (rne)
Messenger RNA biogenesis [BR:
bbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN115_3441 (rne)
Ribosome biogenesis [BR:
bbm03009
]
Prokaryotic type
rRNA processing factors
BN115_3441 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CCJ60197
LinkDB
All DBs
Position
3754204..3757341
Genome browser
AA seq
1045 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRNVDELQ
WDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVST
PAPAKAPAAAAAAQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQDR
RGERHGSDRNRHRRNEPRGEHAESGDARHHVRGGRRQEERGERGERGQKEARTEREQTQQ
QQAAGQPRQERPSTAETGEEGGRGRGRRGRGRGRREEGQTDTPMTEQENMVAALAETVAT
ALPEKRQAAPAPAAAAAAALTVAETASSNELAPVTEDADGIDGIDANADAGAETGTDPER
KRRRRRSRRGRRSQEDGSTVNAEGVEGADDEQADAPAGVADIETPAQPAEPETVAAPVAV
SVAADEPAATIETAAAEPAAPQATEAPQAEPVVAAADTAPQAVQPVQAELTPVETPQAQA
QPAEPAAAAPVETAPAETAPVETAPVEIAPVETTPVEAPVEPAEQAAAPVEAEAPVAQPE
KTPEPAAVRPAAAIVVPAQAAAPATGALHDVLDAAGLTWVETDPERHAQTQMRIAAAATP
ARLGRERKPVASVSNEPLVQVETRH
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcaccaggaagaactgcgcgttgcaatcgtcgac
ggtcagaaactgatcgatctcgacatcgagactgccggtcgcgaacaacgcaaaggcaac
atctacaaaggcgtcatcacccgcatcgaacccggcctggaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcgcgcagtttcttcaaggaa
ggcgtggacgtgcgcaccgcacgcatccaggacgccctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacctcgtcctgatgccgaacaacccgcgcggcggcggcgtatcgcgc
cgcgtcgaaggcgaggaccgccaggaactgcgcgacaccatggagcagctcgatgtcccc
cagggcatgagcatcatcgcgcgcaccgccggcatcgggcgcaacgtcgacgaactccag
tgggacctgtcctatctgctgcaactctggaccgccatcgacggcgcggcgcgcgacaat
gccgccccgatcctgatctacctcgagtccagcctcgtcatccgcgcgatccgcgactat
ttttcgcccgagatcggcgaaatcctgatcgacaccgacgaaatcgccgaccaggccacc
gccttcatgagcgtggtcatgccggacaacgtccagcgcgtcaaacgctaccgcgacgac
atcccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcgtactcgcgcacc
gtgcagctgccctcgggcggcgcggtggtcatcgaccacactgaagccctggttgccgtg
gacgtgaactcggcccgctccacgcgcggtgcggacatcgaggaaaccgcgctgcgcacg
aacctggaagccgccgaggaagtggcccgccagttgcgcctgcgcgacctcggcggcctg
atcgtgatcgacttcatcgacatggaggacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgcgatgccctgcatttcgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggagctgtcgcgccagcggctgcgtccggcgctcaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaagccatgaaggaaaacaccgcggcggtgcacgcccag
gtgccggtcgacgtggccaccttcctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctggtgctgattcccaacaagcacctggagacgccgcac
caccatatcgaacgcctgcgccacgacgatccgcgcctggaagaaaccaagaccagcttc
gagctggccgaggccccggccaccgacctcacctggcagccgcgcgagcacgagatcaag
gcgcgccccgaagcgctggtcaagggcatcacgcccgcgcagcccgccccggtgtccacg
cccgcccccgccaaggcgcctgccgccgcggcggccgcccagggcggactgggcggctgg
ttcaagcgcctgacttcctggctgggcggcagcgccgagccggccaagaccgaaaccaag
tccgaagacgaaaagcgcggcgcgaaccgtgcgcggcgcgcccacgacggccaggaccgc
cgcggcgaacgccacggctcggaccgcaaccgccatcgccgcaatgagccccgcggcgaa
cacgccgagagcggcgacgcgcgtcatcacgtgcgcggcggacgacgccaggaagagcgc
ggtgaacgcggcgagcgtggccagaaggaagcccggaccgaacgcgagcagacccagcaa
cagcaggcagccggccagccgcgccaggaacgcccctcgaccgccgagaccggcgaagaa
ggcggccgtggccgtggtcgtcgcggccgcggacgtggccgtcgcgaggaaggccagacc
gacacgcccatgaccgagcaggaaaacatggtggcggcactggccgaaaccgtggcgacc
gccctgcccgaaaagcgccaggcggcgcccgcgccggcggccgccgctgccgcggccctg
acggtggccgaaaccgccagcagcaatgagctggctcccgtgaccgaggatgccgacggc
atcgacggtatcgacgccaatgccgacgccggcgccgaaacgggtaccgatcccgagcgc
aagcgtcgccgtcgtcgcagccgccgtggccgccgcagccaggaagacggcagcacggtc
aatgccgaaggcgtcgaaggcgccgacgacgagcaggccgacgcgccggcgggcgtagcg
gacatcgagacgcctgcccagccggccgagcccgagaccgtggccgcccccgtggcagtc
agcgtggccgccgacgagcccgccgccacgatcgagaccgccgccgccgagcctgccgcg
ccgcaagctaccgaggcgccccaggccgaacccgtggttgcagccgccgacaccgccccg
caagcggtccagcccgtgcaagcggaactgacgccggtcgaaacgccgcaggcacaagcc
cagccggctgagccggcagcggccgccccggtggaaacggccccggcggaaacggccccg
gtggaaaccgctccggtggaaatcgctccggtggaaaccaccccggtcgaagccccggtc
gagcctgccgagcaggccgcggccccggtcgaagccgaagcgcccgtcgcccagccagag
aagacgcccgagcccgccgccgtccgtcccgccgcagccatcgtggtgccggcgcaagcg
gccgcaccggcaaccggcgcgctgcacgacgtcctcgacgccgccggcctgacctgggtc
gaaaccgatccggaacgtcacgcgcaaacccagatgcgcatcgccgcggccgccacgccg
gcgcgcctgggccgcgagcgcaagccggtggcttcggtttccaacgaaccgttggtgcaa
gtcgaaacgcgtcactga
DBGET
integrated database retrieval system
