Borreliella burgdorferi N40: BbuN40_0623
Help
Entry
BbuN40_0623 CDS
T02075
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbn
Borreliella burgdorferi N40
Pathway
bbn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BbuN40_0623 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbn03400
]
BbuN40_0623 (mfd)
Enzymes [BR:
bbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BbuN40_0623 (mfd)
DNA repair and recombination proteins [BR:
bbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BbuN40_0623 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADQ29261
LinkDB
All DBs
Position
complement(649094..652471)
Genome browser
AA seq
1125 aa
AA seq
DB search
MDIDEELTTILKNNSNLKKMKEFLEQNIFFSLTGYEGFFKAFLIKKIKEYSKTGKIILIV
KDEHTLDKIKNDLQVITNQIFELNYFSPLVYKGIGSKSTIFNERIKFLINFYKKNPGIYI
TVLKSLLSKIPDKNTLLKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGE
IIDIYPFGEQNPIRIALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINT
LKTKIKSVEYKKILEELDFKKETKTEEMFYPLVANTYLSDEIEKHTPIVNFEINNFEKEI
EKIHQEYEKLYKEAEEAGKNIIDPKRILLNYKTFNLKSDVLFSKIKSLKSKETIEFKIES
ERNFFSNIALTKEEFENWLKNGFKIIIAAESESQKEKLKYIFKELPKVSIEVLKISSSLI
IEKEKIAIILESNIFNTGQKINKAFESSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKR
IKTSSLEKDYIEIEYAEGEKLFIPIEQTNLIQKYIGSDPKNIKLDKISSKTWIKNKANAK
KRIEEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYDETPDQIRAIKEIKEDMMS
FKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNTFKKRFKNFPI
KIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKE
KEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELLI
KHAIESELSRDGQVFLVNHNIEELYYLKTLIERLTPYARIAIIHGKLTGEEIENIMHNFI
KKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQD
SEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDYYLTM
LNKAIEKKMGKISSDEEEVDIEINYSGFIPENYAKNEQDKILIYKKIFKIQTEEESKKIR
SELNDNFGPIPEEINSLLMLAELKILAKDLNITKLKETNRALEIEYKNIESIPMEKIIEI
LQKHPNLLILNPSYQKSIFLSFKNIEKSEKINYIYKNINLLKTST
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggatatagatgaagaactaacaacaatattaaagaataattctaatttaaaaaaaatg
aaagaatttttagaacaaaatatatttttttcattaacaggatatgaaggatttttcaaa
gcctttttaattaaaaaaatcaaagaatatagtaaaaccgggaaaataatattaatagtt
aaagacgagcacacattagataaaatcaaaaacgatttacaagtaattacaaatcaaatc
tttgagcttaactattttagcccccttgtatacaagggcattggctcaaaaagtacgatc
tttaacgaaagaatcaaattcttaatcaatttttataaaaaaaatcctggaatatatatt
acagtcttgaaatcattgcttagcaaaatacccgataaaaatacattactaaagaatata
tataaaattgaaaaaaataccaatattaatacagcagacattgaaaaaactcttataaca
ttgggatatgaaaaaacattaagagtaacaattccaggagaatttacagtaaaaggagaa
attatagatatatacccttttggagaacaaaatccaataagaattgcactaaactttgac
aaaatagaagaaataaaaaaatttaatcccttaacccaattaaaacacgataatgaaatt
ttagaattccaaattcttccaaaaaaagaaattatttgggacgataaaactattaacacc
ttaaaaacaaaaattaaatctgttgaatataaaaagattcttgaagagttggattttaaa
aaagaaacaaaaacagaagaaatgttttatccactagtagcaaatacttacttaagtgat
gagattgaaaaacacacacctattgtaaactttgaaattaacaatttcgaaaaagaaatt
gaaaaaatacaccaagaatatgaaaagctttacaaagaagcagaagaagccggtaaaaat
ataattgatccaaaaagaattctcttaaattataaaaccttcaatctaaaaagcgatgtt
ttattttcaaaaattaaaagccttaaatccaaagaaactatagagtttaaaatcgaaagt
gagagaaactttttttcaaatatagcacttacaaaagaagaatttgaaaattggctgaaa
aatggatttaaaatcattattgcagcagaatctgaatcacaaaaagaaaaacttaaatat
attttcaaagaattgccaaaagtatcaattgaggttttaaaaatatctagctctttaata
atagaaaaagaaaaaattgccattattcttgaatcaaacattttcaatacggggcaaaaa
ataaacaaagcctttgaatcttcaaaaacaaaagctattgactcttttgttgagattgag
aaaaatagtcacgtagttcacataaaccatggaattggtatatttaggcaaataaagaga
ataaaaacaagctctcttgaaaaggattatattgaaattgaatacgctgaaggagaaaaa
ctatttattccaattgaacaaacaaatttaatccaaaaatacattggaagtgatcctaaa
aatattaaattagataaaattagttctaaaacatggataaaaaacaaagcaaacgcaaaa
aaaagaatcgaagagattgcagacaaattaatagaactttattcaaaaagagaaagcatc
aaaggtattaaatacccagaagataacgaattacaattgttgtttgaatctgaatttcca
tatgatgaaactccagatcaaataagagcaataaaagaaataaaagaagatatgatgagc
ttcaaagtgatggatcgccttctttgtggagatgttggatttggaaaaactgaagttgcc
atgagagctgcttttaaagccgtaatgggaaacaaacaggttattgtactctcaccaaca
actatcttagcagaacagcatttcaatacatttaaaaaaagatttaaaaattttccaatc
aaaatcgaagtattaagcagatttataaaaaataacgcagaaagccggatcttaaaagaa
cttaaaagtggaaaaattgatataatcataggaacacacaaaattctttcaaaaaaattc
acctgcaaaaatttagggttaataataattgatgaagaacaaagatttggcgtaaaagaa
aaagaaaaacttaaagaaataagaatttcggttgattgccttgctctttctgcaacacca
attcccagatctcttcacatgtcactaattaagcttagagatatttccgttttaaaaatt
ccgcctcaaaacagagtaaaaatagaagcttatttagaatcgtttagcgaacttttaata
aaacatgcaattgagagtgaactgtctcgagatggtcaagtttttttagtaaatcataat
attgaagaactgtattatttaaaaacactaattgaaagattaaccccttatgcaagaatt
gcaataattcatggaaaactaacaggagaagagattgaaaatataatgcacaattttatt
aaaaaagcgtatcaaattttattggcaacaacaataattgaaaatggaatagacattcca
aatgcaaatacaataataatcaataatgcaaacaagtttggacttgcacagctatatcaa
ctaaaaggaagagttggaagaggatctaagaaagcttatgcttattttttgtaccaagac
agcgaaaagctaaatgaacgctctattgaaagattaagagcaataacagaattttcagag
ctaggagcaggatttaaaatagcaatgaaagatatggaaataagaggcgttggcaatttg
cttggcagagaacaacatggggagattgaatcgattggactagattactatctaacaatg
ctaaataaagcaattgaaaagaaaatgggaaaaatttcatcagatgaagaagaggttgat
attgaaattaactatagtggatttattcctgaaaattatgcaaaaaatgagcaggataaa
atactaatctacaaaaaaatctttaaaattcaaaccgaagaagaaagtaaaaaaataaga
tcagagctaaacgacaactttggcccaatacccgaagaaataaacagtctattaatgtta
gctgaacttaaaattctagcaaaagatttaaacataacaaaattaaaagaaacaaacagg
gctttggaaatagaatacaaaaatatagaaagcattcctatggaaaaaataatagaaata
cttcaaaaacatcctaatttattaatattaaatccctcatatcaaaaatcaatattttta
agctttaaaaatattgaaaaatctgaaaaaataaattacatatataaaaatattaactta
ctaaaaacaagcacataa
DBGET
integrated database retrieval system
