Babesia bovis: BBOV_I003540
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Entry
BBOV_I003540 CDS
T01085
Name
(RefSeq) RNB domain family protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
bbo
Babesia bovis
Pathway
bbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBOV_I003540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbo03019
]
BBOV_I003540
Messenger RNA biogenesis [BR:
bbo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
BBOV_I003540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
CSD2
OB_HELZ2
Rrp44_CSD1
Motif
Other DBs
NCBI-GeneID:
5477220
NCBI-ProteinID:
XP_001609004
UniProt:
A7AWK8
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Position
1:complement(448250..451314)
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AA seq
951 aa
AA seq
DB search
MIDADDVLTEQLPLKRSVRTFWRASGHSNVKRFTREVYYRTDLGCGLDSCTECPRSSTQG
TLDGSKPILILTVDVLLNQMTFCERCLDNCVIPATVANEVRRRSLTLYARMKRLILSGTG
NDVVMNDVDHVPKSFYLFSNENFEPTHVEERGNITTAQRDELLIERCAEWYRSHVPSSNR
VIILRNNNSQDPLVNEDALSVDSDPSASGSSALERLTVEDWATELKPIVTDVFEYVAARR
TDQRHHSDNASDDGSIYPAHLSEMEMQDGIDSGRYHRGVLHMYPGSFQNGYVSCGEDEYK
VCGTYNLNRAIHGDAVCIEIVTDGMDVVVPDSGDDAAVPEDIVAEDSEDIKLLDVDKTDK
PLECLKKECRVVGILKRNWREYCGTLMAVDEAIDMVGHSHMVQRIFVPVDARIPYICIDT
RKSSELENKRIVVVIDSWDRFSRKPSGHWVEIIGDVEDLETESAVILREHEVITREFPPK
AYMELPPADWKPGAEDIKLRKDFRKNLVFSVDPPGCKDIDDALGFSVLDNGNIEVSVHIA
DVTHFVKAGSFIDKEASKRCTTVYLVDRRTDMLPSLLTTNLCSLVPNEDRLCFSVVWQFD
RNNEIVDTQFYKGIIRSSRAFTYKDAQDLIDAGGSDNITEALKGLDNIAKILRAKRFESG
AVELESPEVKFEYELTDVRKMQKYVLYDTNRMVEEFMLLANVSVATKIFERFPTSALLRR
HPPPVDERLKVLQRSLSQHGIEFEFGNSRDLNLSLKRLVQSGDPRLGSALRIMTTRCMSQ
AVYCHSGEAGVTSFKHYGLSSELYTHFTSPIRRYADVIVHRMLAAALDIEAMDTSFYQEL
SSQCEVLNKRHRNATWCGRESSRLFAYLFLKQKGEVTATATVIGTSEKRICVIAHELGIE
ATARVDISEFDAQTQRATLACGKHVNLFDHVTVKLSAENKHYRYNIKAELI
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgcagatgatgtattaacggagcagcttccgttgaagcggtccgtcaggacc
ttctggcgtgcgtcagggcacagcaacgtcaagcgctttacgcgtgaagtttactatcgc
accgatttgggttgtggtttagatagctgcacagaatgtccacgatcttctactcaaggc
actctagatgggagcaagccgatattgatcttgacggtggatgtcttgttaaaccagatg
acattttgcgagcgatgtttggataattgtgtgattccagcaaccgtggctaacgaagtt
cgtcgtagaagccttactctttacgctcgcatgaaaaggcttatcctatctggtactggt
aatgatgtcgtcatgaacgatgttgaccacgtgccaaaaagcttctatctattttctaac
gagaactttgaacctacacacgtagaggagcgtggtaatatcacaacagcccagcgtgat
gagcttttaattgaaaggtgtgctgaatggtaccggagccatgtgccgtcgtctaatagg
gtgattattctgcgtaacaacaattcgcaggatcctttagtaaatgaagatgcattatct
gtggactcagatcctagtgcatcgggatcttctgctttggagcgtttgacagttgaagac
tgggccactgaactgaagcctattgttactgatgtatttgaatatgtagccgcaaggcga
acggatcaacgacatcactctgacaacgcctctgatgacggtagcatataccctgcgcat
ctctcagaaatggagatgcaggatggtattgacagtggaaggtaccatcgtggtgtgctc
catatgtatcccggttccttccaaaacggctatgtatcctgcggtgaagatgaatacaag
gtttgtggtacatacaacttaaaccgtgcaattcacggtgacgctgtgtgtattgaaatc
gttaccgatggtatggatgtcgtcgtcccggatagtggtgatgacgcggcagtgccagag
gatatagttgctgaagactcagaggacattaaactcttggatgtagataaaactgacaaa
ccactagaatgcctgaaaaaggaatgccgggtcgtcggtatattgaagcgcaattggcgt
gaatactgtggtaccttaatggcagttgacgaggctattgatatggtcggtcatagtcat
atggtacaacgcatatttgtccccgtggatgcacgtattccgtacatatgcatagatacg
cggaagtccagtgaactcgaaaacaaaaggatagttgtggttatcgacagttgggatcgt
ttttctaggaagccaagtggccactgggtggaaataataggtgatgtagaggacttggaa
actgaaagtgcagttatattgcgtgaacatgaagtaattacccgtgaattcccaccgaag
gcctatatggagctaccaccagcagattggaagcctggagctgaggacatcaagctccgg
aaggacttccgcaagaatctagtgttttccgtggatccaccaggttgtaaagatattgac
gatgcgcttggtttttctgtgttggataacggtaacatcgaggtttctgtacatatagct
gatgtaacccattttgtcaaagctggcagtttcatcgataaggaggcttcaaagcgatgc
acaacagtatacctggtagatagacgtacggacatgcttccgtcgctcttaactactaat
ttatgttcgctggtgcctaatgaagaccgtttgtgtttttctgtggtttggcaatttgat
agaaacaacgaaatcgtggatacacaattctacaagggtatcatacgcagctctcgtgcc
ttcacttacaaggatgctcaggaccttatagacgctggagggagtgacaacattactgag
gcactaaagggtttagataacatcgcaaagatattgcgtgccaaaaggttcgaaagcgga
gctgtcgaactggagtcgccagaggttaagttcgagtacgagttaaccgacgtccggaag
atgcagaagtatgtattgtacgacacaaatcgtatggttgaagagttcatgcttctggcc
aacgtgagtgtggcaacaaagattttcgaacgctttcctacctcagcactgctgaggagg
catcctcctccggtggatgagcgtctcaaggtgctacagaggtcgctatcgcaacatgga
attgaattcgaattcggcaattcgcgcgacctcaatctatcgctaaagcgcctagtacaa
agcggtgatccacggctgggtagcgcattgcggataatgaccacgcgatgcatgagtcaa
gctgtttactgtcattccggagaagcaggtgttaccagcttcaaacattacggactcagt
agcgagctctatacccattttacatcgcccattcgtcgttacgctgacgttattgtgcat
cgcatgcttgccgccgcgcttgatatcgaggccatggacaccagcttctaccaagagctg
tcctcgcagtgtgaggtgctcaacaagcgccacaggaacgccacatggtgtggtcgcgag
tccagccgtttgttcgcatatctctttctcaagcagaagggtgaagtgacagccactgct
acagtcattggcaccagtgaaaagcgaatatgcgtcattgcccacgagcttggcatcgaa
gctactgcgagagtggacatctcggagtttgatgcgcaaacccagcgtgcgacgctagcc
tgcggcaagcacgttaaccttttcgatcacgttaccgtcaagctcagtgctgaaaacaag
cattacagatacaacataaaagcagaattgatataa
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