Babesia bovis: BBOV_II002900
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Entry
BBOV_II002900 CDS
T01085
Name
(RefSeq) putative u6 snRNA-associated sm-like protein Lsm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
bbo
Babesia bovis
Pathway
bbo03018
RNA degradation
bbo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BBOV_II002900
09123 Folding, sorting and degradation
03018 RNA degradation
BBOV_II002900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbo03019
]
BBOV_II002900
03041 Spliceosome [BR:
bbo03041
]
BBOV_II002900
Messenger RNA biogenesis [BR:
bbo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BBOV_II002900
mRNA degradation factors
5'-3' decay
Lsm complex
BBOV_II002900
Spliceosome [BR:
bbo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
BBOV_II002900
Complex C
U2 snRNP components
BBOV_II002900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
VGCC_beta4Aa_N
Hfq
Apc5_N
Motif
Other DBs
NCBI-GeneID:
5478042
NCBI-ProteinID:
XP_001609813
UniProt:
A7ATF6
LinkDB
All DBs
Position
2:683386..683901
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AA seq
99 aa
AA seq
DB search
MLFFNFFQSLAEKGASVTVELKNDLQLTGRLHAVDQYLNFKLSNVTASDTERYPHLLSVV
NCFVRGSVVRYVYLNSSDVNTEELQELCRREAMKSNVDK
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgttattcttcaacttcttccaatcgcttgcggagaagggcgcgagtgtaacggttgag
ttaaagaacgatctacagctgactggccgtcttcatgctgtggaccagtacctcaacttc
aagctgagcaatgtgacggccagtgacaccgagcgttaccctcacctgctgtcggttgtg
aattgctttgtgagaggctcagtggtgcgttacgtctacctcaatagctccgacgtcaac
actgaggagctccaggagctgtgtcgccgcgaggccatgaagtctaacgtagacaagtaa
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