Babesia bovis: BBOV_II005660
Help
Entry
BBOV_II005660 CDS
T01085
Name
(RefSeq) rRNA-processing arch domain family protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bbo
Babesia bovis
Pathway
bbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBOV_II005660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbo03019
]
BBOV_II005660
03041 Spliceosome [BR:
bbo03041
]
BBOV_II005660
03009 Ribosome biogenesis [BR:
bbo03009
]
BBOV_II005660
03016 Transfer RNA biogenesis [BR:
bbo03016
]
BBOV_II005660
Enzymes [BR:
bbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBOV_II005660
Messenger RNA biogenesis [BR:
bbo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
BBOV_II005660
Spliceosome [BR:
bbo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
BBOV_II005660
Complex C
U4/U6.U5 tri-SnRNP related factors
BBOV_II005660
Ribosome biogenesis [BR:
bbo03009
]
Eukaryotic type
Pre-60S particles
Helicases
BBOV_II005660
Transfer RNA biogenesis [BR:
bbo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
BBOV_II005660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
Alpha-amylase
Motif
Other DBs
NCBI-GeneID:
5478318
NCBI-ProteinID:
XP_001610085
UniProt:
A7AUA6
LinkDB
All DBs
Position
2:complement(1285894..1289106)
Genome browser
AA seq
986 aa
AA seq
DB search
MEKVLSMFDAFEEITSNRVMDYNAEGFTTAPALVGTSEHRLASQVVQERLPAGKNCSHHR
LRPVTYETPPYEPGEPARSYPFTLDDFQKRSIECLEKGESVLVCAHTSAGKTVVAEYAIA
MGLRDKRRIIYTSPIKALSNQKYRNLCDEFVDVGLMTGDVTLNPDASVMVMTTEILRSML
YRGSEIVQEMKWVIFDEVHYMRDAERGVVWEETIILIPQKVNLVFLSATIPNSIEFAEWI
CRIKNMPCNVIATDYRPTPLQHYIYTQKLNGINLVLDDSGRFRQDAFNNAMKTIDNIEEG
RRKRVRNTKEIEEVITMCHEKKFTPAIVFAFSKSECEANATVLKSLDMTDEAEKTLITEI
YQNAMATLADDDRKLPQTVFMLPLLRRGIGIHHGGLLPIIKEIIEILFQEGLIKVLFSTE
TFSMGVNMPARCVVFTNLSKWDGQTNRLITSGEYIQMAGRAGRRGLDEHGLVIIMMDRGI
KPEEAKAIFMGKANRLDSSFHLGYNMLLNLMRIENTTPEFLIERSFLQFQRDKHSRKFQE
QLIEVRREIDEKRSMLKNEDLVELTRLYTLRKELAQVKDAISQAVAKDLRMLNFLNFGRL
VRLERDGQTWEWGVVFATPQLKIRRSSYDKERVYIVDCLVLCDRDSVSGNRTHEPLPTTN
INQGIFVVVPFAIDCVKEIAQIRMKVQEDFRVNSDLCQSTMRAKYAQLMDHMKTLPQLPV
LDPVEHIKIDTPEMKGLLEKYKQLESEIDNSRIVLTGEYEQKYEVFMEYAEAQTKERNIL
ANIEVSHQIVMKDDLKHMKGVLRDLNYVDENGIVTLKGSIACEINATDELVVAEMFLRNF
FEDLEPEYICAALSCLVVDDKKGEKLPKDQKLLEAYNSILQIAKDIATVMVANRLDVRVD
DFVNKFKPAMMTVVLKWANGLSFAEVMQESTLFEGSVIRGVRRLEELLRQLACTSRSIGN
LQMEQKFVTCINKLKKGIIFTSSLYL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtgcttagcatgtttgacgcctttgaggagataacttctaaccgggtaatg
gactacaatgccgaaggatttacaacagcacccgccttagttggtacctcagaacaccgc
ctggcgtcacaagtggtccaggaacgtttaccagctggtaaaaactgctcacatcatagg
ttaaggccagttacctatgaaacgccgccatatgaacctggagaaccagcaagatcttac
ccattcactctagatgatttccaaaaacgatctattgaatgccttgaaaagggtgaaagc
gtattagtatgtgcacatacatctgctggaaagacggtggtagccgaatatgccatagct
atgggcctcagagataaacgaaggatcatatacacaagtcccatcaaggcattgagtaac
caaaagtatcgcaacctatgcgacgagtttgttgatgtaggactcatgacgggagatgta
acacttaacccagatgcatcggttatggtcatgacaacggagattttaaggtcaatgttg
tatcgcggtagcgaaatagtgcaggaaatgaagtgggttatcttcgatgaagtacattac
atgagagatgctgagcgcggtgtcgtgtgggaagagacgattatactaataccgcagaaa
gtcaacttggtgtttttgtcggcgaccatacccaattcaattgaatttgctgaatggata
tgcagaattaaaaatatgccatgcaatgtcatcgctactgattacagaccgacacctttg
cagcattatatatatacgcagaagttaaatggaattaatctggtgctggatgactctggg
agattcagacaagatgcatttaacaatgctatgaaaacaatagataatatagaagaaggc
cggcgcaaacgtgtgagaaatactaaagaaattgaagaagtgataaccatgtgccatgaa
aagaaatttacaccggccattgtgtttgcgttttccaaaagtgaatgcgaggcaaacgcc
actgtgctcaaatcactggatatgactgacgaagctgagaagacacttatcactgaaata
taccaaaatgcaatggctacactagcagatgatgatcgcaagttaccgcaaacagtgttc
atgctaccactactaagacgaggtattggtatccatcatggagggctcctgccaatcatc
aaggagattatagaaatattgttccaggaaggtctgatcaaggtactattcagcacggaa
accttctctatgggagttaacatgccagccagatgtgtggtgttcactaacctgagcaag
tgggatggacagaccaatagactcatcacctcgggtgagtatatacaaatggcaggtcgc
gccggtagaaggggtcttgatgaacatggtcttgttatcatcatgatggaccgtggcatc
aaacctgaggaagctaaagccattttcatgggtaaagccaacaggttggacagctcattt
cacctgggatataacatgctgctcaacctcatgagaatagagaatacgacaccagagttt
ttaatagagcgatcattcctacagttccaacgcgataagcactcgagaaaattccaggag
caattgattgaagtgcgtcgtgaaattgatgaaaaacgttccatgttaaaaaatgaggat
cttgtggaactcaccaggttatatacactacgtaaagagttggcacaagtcaaggatgcc
attagccaagcggtggcaaaggatcttcgcatgcttaatttccttaactttggaagacta
gtgaggcttgaacgtgatggccaaacctgggaatggggagttgtcttcgccacgccacaa
ttaaagattagacgtagttcatatgacaaggaacgtgtatacatcgttgactgtctggta
ctctgtgatcgtgatagcgtcagcggtaatcggacccatgaaccattgcctacaacgaat
atcaaccaaggcatcttcgtggtagtcccattcgccatagactgtgtaaaagaaatcgct
cagatacgcatgaaggtccaagaagatttcagggtcaatagtgacctttgtcaatccaca
atgagggccaagtacgcacagctaatggaccacatgaaaacattgccacaactacccgtt
ttagaccctgtggaacatattaaaatagacacgcctgagatgaaagggttgttggaaaag
tacaaacagctggaatccgagattgataactcgcggattgtactgactggggaatatgaa
cagaagtacgaagtattcatggaatatgcagaggcacaaacaaaggaacgaaatatactg
gccaatatagaagtatcccaccaaattgttatgaaagatgacctaaaacacatgaaagga
gttttacgtgaccttaactacgtagatgaaaatggaatagtaacactcaagggaagtatc
gcatgtgaaatcaatgcaacagatgaacttgtggtagctgaaatgtttctacgcaacttc
ttcgaagatttggaacccgaatacatatgtgcggcgctaagctgccttgttgtcgacgac
aagaagggagagaaattgccgaaggaccaaaagttactggaagcatacaacagcatactg
caaattgccaaagatatcgcaactgtgatggtggctaaccgcctagacgttagggtggat
gattttgtcaacaagtttaaaccagcgatgatgactgtggtactaaaatgggcaaacgga
ctatcattcgcagaagttatgcaagaatcaacgctgttcgaaggatctgtaattagagga
gttagacgactagaagagcttttaagacagttggcctgtacatcccgaagcataggcaac
ctacagatggaacagaagtttgttacatgcattaataagctcaaaaaaggtatcattttc
acatcatcactctacctctag
DBGET
integrated database retrieval system
