Brevibacillus borstelensis: RFB14_18860
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Entry
RFB14_18860 CDS
T09438
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bbor
Brevibacillus borstelensis
Brite
KEGG Orthology (KO) [BR:
bbor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbor03016
]
RFB14_18860
Enzymes [BR:
bbor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RFB14_18860
Transfer RNA biogenesis [BR:
bbor03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RFB14_18860
Prokaryotic type
tRNA splicing ligases
RFB14_18860
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
RNA12
Motif
Other DBs
NCBI-ProteinID:
WNF04453
LinkDB
All DBs
Position
complement(3879909..3881132)
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AA seq
407 aa
AA seq
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MYQTIDNVRVWGTPLENAVSQAVTCSKYGNVVQVLLMADHHKGYSQPVGGVVVYDGQISP
SGVGYDIACGNKAVRTDLRYEEIKTKIPQIMDEIAKTISFGIGRVNNEKVDHDLFEEEDW
YVYKQIGKHEHDSLKALAKSQLGTVGSGNHFVDLFVEEATGMVWIANHFGSRGFGHKTAS
GFLNLANGRKFSDKAPGESMDQPPTLLDLDSELGEMYFKAMTLAGKYAYAGRDYVIDQVL
GILGAETTFEVHNHHNFAWKEIHDGKEYVVVRKGATPSAPGQLGFIGGSMGDLSVIVKGK
DTQENKEAFYSTVHGAGRIMSRTEAAGRMNWKTRKRSGGKITVEQMKRAISEFGVELRGA
GTDESPFVYKKLSEVLRAHEETVEVLHVLKPIGVCMAGADEFDPYKD
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaaaccattgacaatgtaagagtgtgggggaccccacttgaaaatgcggtatcg
caggccgtgacctgctccaaatacggcaatgtcgtccaagtattgctcatggcggaccac
cacaaaggatactcgcagcctgtcggaggcgttgtcgtctacgacggacaaatctctcct
tccggcgtcgggtacgacatcgcctgcggaaacaaggccgtccgtaccgacctccgctat
gaggaaatcaagacgaaaatcccgcaaatcatggatgagatcgccaaaaccatttccttt
ggaatcgggcgggtcaacaacgagaaggtcgatcacgatctattcgaagaggaagattgg
tacgtgtacaagcagatcggcaaacacgagcacgactccctgaaggctttggccaaaagc
cagctcggtaccgtgggaagcgggaaccatttcgtcgatctgttcgtggaggaagcgacg
ggaatggtgtggatcgccaaccatttcggcagtcgcgggtttggacacaagaccgccagc
ggatttttgaatctggcgaatgggcgaaagttttcggacaaggcaccgggcgagagcatg
gatcagccgccgacgctgctcgatttggacagcgagctgggcgagatgtatttcaaggcg
atgacgcttgcgggcaaatacgcgtatgcaggccgtgactatgtgatcgatcaggtttta
ggcattctcggtgcggaaacaactttcgaggttcataaccatcacaatttcgcctggaag
gaaatacatgacggcaaagagtacgtggtcgtcagaaaaggggcgacgccatcagcgccg
ggtcagcttggctttatcgggggcagcatgggtgatttgtccgtcatcgtgaaaggaaag
gatacacaggaaaacaaggaggccttttacagcacagtgcacggagcaggtagaatcatg
agccgtaccgaggcggccggcaggatgaattggaaaacgcgcaagcgcagcggcggcaaa
attaccgtggagcagatgaagcgggcgatcagcgagtttggcgtggagcttcgcggagcg
ggaacggatgagagtccgttcgtatacaaaaagctgtccgaggtactgcgggcccatgag
gagacggtagaggttttgcatgtattgaagcccatcggtgtttgcatggcgggtgcggat
gagtttgatccgtataaggattga
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