Bifidobacterium bifidum PRL2010: BBPR_0419
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Entry
BBPR_0419 CDS
T01340
Symbol
rpoC
Name
(GenBank) RpoC DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbp
Bifidobacterium bifidum PRL2010
Pathway
bbp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBPR_0419 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbp03021
]
BBPR_0419 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbp03400
]
BBPR_0419 (rpoC)
Enzymes [BR:
bbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBPR_0419 (rpoC)
Transcription machinery [BR:
bbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBPR_0419 (rpoC)
DNA repair and recombination proteins [BR:
bbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBPR_0419 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Pentapeptide
Pentapeptide_3
SF-assemblin
Motif
Other DBs
NCBI-ProteinID:
ADP35528
UniProt:
A0A0H3EB47
LinkDB
All DBs
Position
512221..516252
Genome browser
AA seq
1343 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRNWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIICERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTSVDEEQRHNDLPDLQDEFDTEIGNMAKRRDNEIENRARKVEED
LAQLEAEGEGRGPARTKLRNGAERDMAAIRQRYDDQIQRLNAVFDRFKSLKPGDLEGDVD
LWREMQDRYGDYFEGCMGAEAIQKRLQDFDLEAASKQLREEIDSGSGQRKARALKRLKVV
NAFLTTGNKPEAMVLTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LNAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDMNFAQNMKSAKRLVDRG
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHVVSMPSQDMILGLYYLTTVMDGAKGQG
RVFSSYAEAQMALDLHEIDMQAEVLIRLPKDFVLPTGWEPREITVVDPEPGSPDVVKEER
FHDGSVLFATSMGRILFNETLPVDYPFVNEQAKKKKLAKIVDDISTRYSTAQVAASLDAL
KDLGFTRAPWSGVTFAFSDVVEPPERNELVAQSEEEVAKINEQYDLGFYTEEDRRQAIID
VWTKCGEEVSKAIEKNFDPKNNLSIIVESGARGNMTQINQISGVRGLVNNPKGEIIPRPV
ESNYRRGLSVLEYFISEHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LTMRVADRDENGNLTLVKAADGGPYSRLLAADVIDPADGTTVLYKRDDALSMDVLNDLVA
HGVEEVQARSVLTCESKRGVCAKCYGWSLATNTLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPIAEFAGVVKVENTDHGRQITLTPDDTS
VEPIVYTDTRRAPMLVKNGDHVAAGDQLVEGSVDPKKILRILGPRAAQVNIVNEVHTVYR
SQGVDIHDKHIEVIVHQMLRRVTVIDSGDTPLLPGELVDQARFKAANKETIKNGGKPAAA
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYQNAVVEPDKAIRDTIYPNFGLGADMDGSQTDFSDADLSDVDFSNIDFGDLKLGDDF
NPDDFIDDQGGNDFGADSGNDLV
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggatcggcctggccaccgccgacgacatc
cgcaattggagccacggcgaggtcaagaagccggaaaccattaactaccgtaccctgaag
cccgagaaggacggtctgttcggcgagcagatcttcggacccacccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgaacggtgcggcgtg
gaggtcaccaagtcccgcgtgcgccgcgagcgcatgggccacatcgagctggccgccccc
gtcacccacatctggttcttcaagggcgtgccgagccgtctcggctacctgctggacatc
gctccgaaggacctggagaaggtcatctacttcgcggcctacatggtcacgagcgtggat
gaggagcagcgccacaacgacctgcccgacctgcaggacgagttcgataccgagatcggc
aacatggccaagcgccgtgacaacgagatcgagaaccgcgcccgcaaggtcgaggaggat
ctcgcccagcttgaggccgaaggcgagggcaggggccccgcacgcaccaagctgcgcaac
ggcgccgagcgcgacatggccgccatccgccagcgttacgacgatcagatccagcgtctg
aacgccgtgttcgaccgcttcaagagcctgaagccgggcgacttggaaggcgacgtggac
ctgtggcgcgagatgcaggaccgctacggcgactacttcgagggttgtatgggtgcagaa
gccatccagaagcgcctgcaggacttcgacctggaggccgcctccaagcagctgcgcgag
gagatcgactccggctccggccagcgcaaggcccgcgccctcaagcgcctgaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctgaccgtcatcccggtc
atcccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgat
ctcaacgacctctaccgtcgcgtgatcaaccgcaacaaccgtctgaagcgcctgatcgag
ctcaacgcgcccgagatcatgctgaacaacgagaagcgcatgctgcaggaagccgttgac
tccctgttcgacaacggccgccgcggccgtcccgtcaccggcgcctcgaaccgcccgctc
aagtccctttcggacatgctcaagggcaagcagggccgcttccgtcagaacctgctgggt
aagcgagtcgactactccggccgttccgtgatcgtcgtcggcccgtcgctgcgcatgcac
cagtgcggtctgccgaagccgatggcgctggagctgttcaagccgttcgtcatcaagcgt
ctggtcgacatgaacttcgcgcagaacatgaagagcgccaagcgtctcgtcgaccgcggc
gactccgaggtgtggggcgtactcgaagaggtcatatccgagcatcccgtgctgctcaac
cgtgcgcctacgctgcaccgtctgggcatccaggcgttcgagccgatcctggtcgaaggc
aaggccatccacctgccgccgctcgcctgcgccgcgttcaacgccgacttcgacggcgac
cagatggctgtccacctcccactgagcgccgaggcacaggccgaggcccgctcgctgatg
ctcgcttccgacaacatcctcaagcccgccgacggccacgtcgtttccatgcctagccag
gacatgatcctcggcctgtactacctgacgaccgtcatggacggcgccaagggtcagggc
cgcgtgttctcctcatacgctgaggcgcagatggcgctcgacctgcacgagatcgacatg
caggccgaagtgctgatccgcctgccgaaggacttcgtgctgccgaccggctgggagccc
cgcgagatcaccgtcgtggatccggaaccgggcagccccgacgtcgtcaaggaagagcgc
ttccacgacggcagcgtgctgttcgctacctccatgggccgcatcctcttcaacgagacg
ctgcccgtcgactacccgttcgtcaacgagcaggccaagaagaagaagctcgccaagatc
gtcgacgacatctccacccggtactccaccgcccaggtggccgcctcgctggatgcgctc
aaggatctcggcttcacccgcgcaccttggtccggcgtgaccttcgcgttctccgacgtc
gtcgagccgccggagcgtaacgagctggtcgcccagtccgaggaggaagtcgccaagatc
aacgagcagtacgacctcggtttctacaccgaagaggaccgccgccaggcgatcatcgac
gtgtggaccaagtgcggtgaggaagtctccaaggccatcgagaagaacttcgacccgaag
aacaacctctcgatcatcgtcgagtccggtgcacgaggcaacatgacccagatcaaccag
atttccggcgtgcgtggtctggtgaacaacccgaagggcgagatcattccgcgaccggtc
gagtcgaactaccgccgcggactgtccgtgctggagtacttcatctccgagcacggcgct
cgtaagggtctggccgataccgcactgcgtaccgcagagtctggctacctgacccgtcgt
ctggtggacgtctcgcaggacgtgattgtgcgcgaggaggactgcggcaccaagcgcggt
ctgaccatgcgcgtcgccgaccgcgacgagaacggcaacctgacgctcgtcaaggccgcc
gacggcggcccctactcccgtctgcttgcggccgacgtcatcgacccggccgacggcacg
accgtgctgtacaagcgcgacgacgccctgtcgatggacgtgctcaacgacctggtcgcg
cacggcgtcgaagaggtgcaggcgcgttccgtcctgacctgcgagtccaagcgcggcgtg
tgcgccaagtgctacggctggtcgctggccaccaacacgctggtggacgtcggcgaggcc
gttggcatcgtcgctgcccagtccatcggcgagcctggtactcagctgacgctgcgttcc
ttccactccggtggtgtggccgccgcgtccgatatcacccagggtcttccccgtgtcacc
gagcttttcgaagcccgtaccccgaagggtgaggcgccgatcgccgagttcgccggcgtg
gtcaaggtggagaacaccgatcacggccgtcagatcacgctgacgccggacgacacaagc
gtcgaaccgatcgtctacaccgacacccgtcgcgcgccgatgctggtcaagaacggcgat
cacgtggccgccggcgaccagctggtcgaaggttccgtcgatccgaagaagatcctgcgc
atcctcggcccgcgtgccgcccaggtcaacatcgtgaacgaagtgcacaccgtgtaccgt
tcccagggtgtggatatccacgacaagcacatcgaggtcatcgtgcaccagatgctgcgc
cgcgtcaccgtgatcgattccggtgacaccccgctgctgcctggcgagctcgtcgaccag
gcgcgcttcaaggccgccaacaaggagaccatcaagaacggtggcaagccggccgccgct
cgtccggagctcatgggcatcaccaaggcctcgctggcaaccgactcgtggctgtccgcc
gcctccttccaggagacgacgcgcgtgctcaccgaagccgccctgagccagaaggtcgat
gacctcaagggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtactggc
ctcgcccgctaccaaaacgccgtggtggagcccgacaaggccatccgcgacacgatctac
ccgaacttcgggctgggcgcggacatggacggctcgcagaccgacttctccgatgccgac
ctgtccgatgtggacttctccaacatcgacttcggtgacctgaagctcggcgacgacttc
aatcctgacgatttcatcgatgatcagggcgggaacgacttcggcgccgactccggcaac
gatctcgtctga
DBGET
integrated database retrieval system
