Bordetella bronchiseptica RB50: BB0014
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Entry
BB0014 CDS
T00141
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bbr
Bordetella bronchiseptica RB50
Pathway
bbr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BB0014 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbr03021
]
BB0014 (rpoB)
03400 DNA repair and recombination proteins [BR:
bbr03400
]
BB0014 (rpoB)
Enzymes [BR:
bbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BB0014 (rpoB)
Transcription machinery [BR:
bbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BB0014 (rpoB)
DNA repair and recombination proteins [BR:
bbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BB0014 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
CAE30516
UniProt:
Q7WRD9
LinkDB
All DBs
Position
11623..15759
Genome browser
AA seq
1378 aa
AA seq
DB search
MQPRVGVLMPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEG
LQAAFSSIFPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDRE
VSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSG
KLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFD
NFELKSEGGMMEFVAERWKGEMARFDIADRDGKVIVEKDKRINAKHLRDLAAGGIQRVSV
PEDFLYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQTLYTNDLDRGPYI
SQTLRADETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNS
RLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRA
GLVRVERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITH
KRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGF
LETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLVACREAGETMLTA
PGNVHYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVER
TVAVDSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNIN
QRPIVARGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADD
RYTSIHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVSADDVLVGK
VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQ
SIIDDELRRYRQDLNDQLRIVENDQFDRIEKMLVGKAVNGGPRKLAKGATLTKAYLADLD
RWQWFDIRLADEQHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVY
LAVKRRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVL
EVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELAN
NLKKGVPFATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERP
VTIGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAS
YTLQEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctcgagtcggagtgctcatgccttactcgtacaccgaaaaaaagcgcatccgc
aaaagctttgccaaacgtgaggacgttcaaaacgttcccttcctgttggcgacacagctt
caatcctacctaactttcctgcaagccgacaccgcgacctcggatcgcgtcaatgaaggt
ctgcaggcggcgttctcgtcgatttttccgattgtcagccataacggaatggcgcgcttg
gagttcgtcagctatgcgctgggcgagccggtgtttgatgtcaaggaatgtcagcagcgc
ggcctgacctatgcgtcgccgctgcgcgccaaggtgcgcctggtgctgctggaccgcgaa
gtcagcaagccgaccatcaaggaagtcaaggagcaggaagtctacatgggcgaaattccg
ctcatgaccggcaccggctcgttcgtcatcaacggcaccgagcgcgtcatcgtctcgcag
ctgcatcgttcgccgggcgtgttcttcgagcacgaccgcggcaagacgcacagctcgggc
aagctgctgttctcggcccgcgtgattccctaccgcggctcgtggctggacttcgaattc
gatcccaaggacgtgctgttcttccgcgtggaccgtcgccgcaagatgccggtgacgatc
ctgctgaaggccatcggcatgacgcccgaatcgatcctcgcgcacttcttcgatttcgac
aacttcgaactcaagagcgaaggcggcatgatggaattcgtcgccgaacgctggaagggc
gagatggcgcgctttgacatcgccgaccgcgacggcaaggtgatcgtcgagaaggacaag
cgtatcaacgccaagcacctgcgcgacctggctgccggcggcatccagcgcgtgtcggtg
cccgaggatttcctgtacggccgcgtgctggccaagaacatcgtcgatcccgacaccggc
gaagtcgtggcgcatgccaacgacgagatcaccgaaagcgtgctcaacgcgatgcgcgcc
gccaacgtgcgcgacatccagacgctgtacaccaacgacctggatcgcggtccctacatt
tcgcagacgctgcgcgccgacgaaaccgccgaccagatggccgcgcgcgtggcgatctac
cgcatgatgcgtcctggcgaaccgcccaccgaagaagcggtggaagcgctgttccagcgt
ctgttctacagcgaagagacgtacgacctgtcgcgcgtgggccgcatgaaggtcaacagc
cgcctgggtcgcggcgacgacagcaccggtccgatgacgctgaccaacgaggacatcctc
gaaaccatcaaggtgctggtcgagctgcgcaacggccgtggccagatcgatgacatcgat
cacctgggcaaccgccgcgtgcgttgtgtcggcgaactggccgagaaccagttccgcgct
ggcctggtgcgtgtcgagcgcgccgtcaaggagcgtctgggccaggccgagaccgaaaac
ctgatgccgcacgacctgatcaactccaagccgatctcggccgccatcaaggagttcttc
ggttcgagccagctgtcgcagttcatggaccagaccaacccgctgtcggaaatcacgcac
aagcgtcgcgtttccgcactgggcccgggcggcctgacgcgcgaacgcgccggctttgaa
gtgcgcgacgtgcacccgacccactacggccgcgtctgcccgatcgaaacgccggaaggc
ccgaacatcggcctgatcaactcgatggcgctgtacgcgcgcctgaacgagtacggcttc
ctggaaaccccgtatcgcaagatcatcgacggcaaggtcagcgaccagatcgactacctg
tcggccatcgaggaaagccactacgtgatcgcgcaggccaacgccgcgctcgatgacgaa
ggccgtttcgtcgacgacctggtggcttgccgcgaagcgggcgaaaccatgctgaccgcg
ccgggcaacgtgcactacatggacgtggcgccgtcgcagatcgtgtcggtcgcggcgtcg
ctgatcccgttcctcgagcacgacgacgccaaccgtgcactgatgggcgccaacatgcag
cgccaggccgtgccttgcctgcgtccggaaaagccgctggtcggcaccggcgtcgagcgc
accgttgcggtcgactcgggcacgaccgtgcaggcgctgcgtggcggcgtggttgaccac
gtcgacgccgaccgcgtcgtgatccgcgtcaacgacgaagagaacgtcgctggcgaagtg
ggcgtggacatctacaacctgatcaagtacacgcgttccaaccagaacacgaacatcaac
cagcgtcccatcgtggcccgcggcgacaaggtcgccaagggtgacgtgctggccgacggc
gcgtccaccgacctcggtgaactcgcgctgggccagaacatgctgatcgcgttcatgccc
tggaacggctacaacttcgaagactcgatcctgatctccgaacgcgtcgtggccgacgat
cgctacacctcgatccacatcgaagagctgaccgtggtcgctcgcgatacgaagctggga
cccgaggaaatcacgcgcgacatcagcaacctggctgaaacgcagctcaaccgcctggat
gactccggcatcgtctacattggcgcggaagtcagcgccgacgacgtgctggtgggcaag
gtaacgccgaagggcgaaacccagctcacgccggaagaaaagctgctgcgcgccatcttc
ggcgaaaaggcgtccgacgttaaggacacctcgctgcgcgtgccctcgggcatgaccggc
acggtgatcgacgtccaggtgttcacgcgcgaaggcatcgtgcgcgacaagcgcgcccag
tccatcatcgacgatgaactgcgccgttatcgccaggacctcaacgaccagctgcgcatc
gtcgaaaacgaccagttcgaccgtatcgagaagatgctggtcggcaaggccgtcaatggc
ggcccgcgcaagctggccaagggcgccaccttgaccaaggcctacctggccgacctggat
cgctggcagtggttcgacatccgcctggccgacgaacagcacgctgtcgtgctggagcag
gccaaggaatcgctcgagcagaagcgccaccagttcgacctggccttcgaagagaagcgc
aagaagctgacgcagggcgacgaactgccgccgggcgtgctgaagatgatcaaggtctac
ctggccgtcaagcgccgcctgcagccgggcgacaagatggccggccgtcacggcaacaag
ggcgtggtttcgcgcattacgccggtcgaggacatgccccacatggccgacggcactccc
gccgacatcgttctgaacccgctgggcgtgccctcgcggatgaacgtcggccaggtgctg
gaagtccatctgggctgggccgccaagggcgtgggctaccgcatcgccgacatgctgcgc
gacgagcgcacggcgcaggccaagagcgtacgcggctacctggagaaggtgtacaacacc
acgggcagcagcgcgcatatcgacagcctgaccgacgaggaagtgctggaactggccaac
aacctgaagaagggtgtgccgtttgccacgccggtgttcgacggtgcgaccgaagaagaa
atcggcaagatgctggaactggcctatcccgacgacgtcgccgcgcgcatgcgcctgacg
gcgtcgcgttcgcaggcatggctgtatgacggccgtaccggcgagcagttcgagcgtccg
gtcacgatcggctacatgcactacctgaaactgcaccacttggtggacgacaagatgcac
gcgcgttccaccggcccgtactcgctggttacccagcagccgttgggcggcaaggcgcag
ttcggcggccagcgtttcggggaaatggaagtgtgggcgctggaagcctacggtgcctcc
tacaccctgcaggaaatgctgacggtgaagtccgacgacatcaccggccgcacgaaggtt
tacgaaaacatcgtcaagggcgaccacgtcatcgatgccggcatgccggaatcgttcaac
gtgctggtcaaggaaattcgctcgctggccctggacatggatttggagcgtaactga
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integrated database retrieval system
