Bordetella bronchiseptica RB50: BB1975
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Entry
BB1975 CDS
T00141
Symbol
rnr
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bbr
Bordetella bronchiseptica RB50
Pathway
bbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB1975 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbr03019
]
BB1975 (rnr)
03016 Transfer RNA biogenesis [BR:
bbr03016
]
BB1975 (rnr)
Enzymes [BR:
bbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BB1975 (rnr)
Messenger RNA biogenesis [BR:
bbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BB1975 (rnr)
Transfer RNA biogenesis [BR:
bbr03016
]
Prokaryotic type
tRNA degradation factors
BB1975 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
HTH_20
HVO_A0261_N
MarR_2
Rrp44_S1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
CAE32472
UniProt:
A0A0H3LL03
LinkDB
All DBs
Position
2111957..2114377
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AA seq
806 aa
AA seq
DB search
MPADFDPDVPSREAILTALRSAGAPLSPAELAERMGVERPATLVGFERRLGAMERDGQLL
PNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGPDIFLSPREMLKVLHGDRVLVKPS
GEYRGKPEGAIVEVIERRTNKLVGRFLHEHGLSIVVPEDQRIKHDILIPPSDTNGAQHGQ
VVSVQIMEQPTRHTQPLGRVYEVLGEIDDPGMEIEIAVRKFDVPVDFSEPANKQAARLPD
SVRKTDLKQRVDLRDVPLITIDGEDARDFDDAVYCEPVELGTGQRKRPAWRLLVAIADVS
NYVRPNDALDDDAYERGTSVYFPRRVIPMLPEVLSNGLCSLNPNVDRLVLVCDMVIPATG
AKAGTVTAYQFYNAVMHSHARTTYTSIWEALQQPGGPAAAALGAIMPHVRHLHELYQLLS
QQRRKRGAIDFDTVETRIVCNELGRIEQIVPMVRNDAHKLIEECMLAANTCAADFMSRSK
HPGLYRIHEGPTPERLQSLRDFLRTMGLSLGGGDEPTAKDYGEFLDSVRGRPDYPLLQTM
CLRSMQQAIYSPDNLGHFGLAYPAYTHFTSPIRRYPDLLTHRVIKALLEGQRYMPELEDQ
PIVIGRSQREHEHAVWEKLGLILSGSERRADEASRDVEAWLKCWFVKERVGEDFSGTVTG
VASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRGERTGMRYRLTDKVQVQVSRV
DLEARRIEFRLVKGTSFDALRKAAARGPDEGRRVKKAAAPKPAALKGQTAKQRRAEAKQA
SKPANTPKAAKSAGASAQKKPARARH
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgccgacttcgaccccgatgtcccttcacgcgaagccattctgacggcgttgcgg
tcggccggggcgccgttgtcgccggccgaactggccgaacgcatgggcgtggaacggccc
gcgacgctggtcggcttcgagcgccggctcggggcgatggagcgcgacggtcaattgctt
cccaaccgcaagggcgtgctgctgctggccaccaagctggatttcgtggccggccgcgta
cagggccaccgcgatggcttcggcttcctggtgcgggatgacggcgggcccgatattttc
ctgtcgccgcgcgagatgctcaaagtgctgcacggcgaccgcgtcctggtcaagccgtcg
ggcgagtaccgcggcaagccggaaggcgccatcgtcgaggtcatcgagcggcgcaccaac
aaactggtgggccgtttcctgcacgaacatgggttgtccatcgtcgtgcccgaggaccag
cgcatcaagcacgacattctcattccgcccagcgacaccaacggcgcccagcatgggcaa
gtggtgtcggtgcagatcatggagcagcccacccgccatacgcagccgctgggccgcgtg
tatgaggtgctgggcgagatcgacgatcccggcatggaaatcgagatcgcggtgcgcaag
ttcgacgtgccggtcgatttttcggagcccgcgaacaagcaggccgcgcggctgccggac
tcggtacgcaagaccgatctgaagcaacgcgtcgatctgcgcgacgtgccgctgatcacc
atcgacggcgaggacgcgcgcgatttcgacgacgcggtgtactgcgagccggtcgaactg
ggcaccggccagcgcaagcggccggcctggcgcctgctggtggccatcgccgacgtcagc
aactatgtgcggcccaacgacgcgctcgatgacgatgcctacgagcgcggcaccagcgtg
tattttccgcgccgcgtgattccgatgctgcccgaggtgctgtccaacgggctgtgctcg
ctcaaccccaatgtcgaccgcctggtgctggtgtgcgacatggtgatcccggcgaccggc
gccaaggccggaacggtgacggcctaccagttctacaacgcggtgatgcattcgcatgcg
cgcaccacgtacaccagtatctgggaggcgctgcagcagccgggcggcccggctgccgcg
gcgctgggcgccatcatgccgcatgtgcgccacctgcacgagctgtaccagctgctgtcg
cagcagcggcgcaagcgcggcgccatcgatttcgacacggtcgagacgcgcatcgtctgc
aacgaactgggccgtatcgaacagatcgtgcccatggtgcgcaacgatgcccacaagctg
atcgaagaatgcatgctggcggccaacacgtgcgctgccgatttcatgtcgcgcagcaag
caccccggcctgtaccgcatccatgaaggccccacgcccgagcgcctgcagtccctgcgt
gatttcctgcgcaccatgggcctgtcgctgggcggcggcgacgagcccaccgccaaggac
tacggcgagttcctcgattcggtgcgcgggcgccccgactacccgctgctgcagaccatg
tgcctgcgctccatgcagcaggcgatctacagcccggacaatctcggccacttcgggctg
gcgtatcccgcctatacccatttcacttcgccgatccgccgttatcccgacctgctgacc
caccgcgtgatcaaggcgctgctcgaaggccagcgctacatgccggagctggaagaccag
cccatcgtcatcgggcgctcgcagcgcgagcacgaacacgccgtatgggagaagctgggg
ctgatcctgtcgggcagcgaacggcgcgccgacgaggcttcgcgcgatgtcgaagcctgg
ctgaagtgctggttcgtcaaggagcgcgtcggcgaggatttcagcgggacggtgacgggc
gtggccagcttcggcattttcgtgaccctggataccttgcacgtcgaggggctggtgcac
gtctcggaactgggcggggagtatttccagttcaacgatgccttgcacgaactgcgcggc
gagcgcaccggcatgcgttaccgcctgacggacaaggtgcaggtgcaggtgtcgcgcgtg
gacctggaagcgcgccgcatcgagttccgcctggtcaagggcaccagcttcgacgcgctg
cgcaaggccgccgcgcgcggtcccgacgaggggcgcagggtcaagaaggcggcggctccc
aagccggcggccctgaaggggcagaccgccaagcagcggcgcgccgaggccaagcaggcc
agcaagccggccaatacgcccaaggcggccaagagcgccggcgcgtcagcgcagaaaaag
ccggcgcgcgcacgccattga
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