Bordetella bronchiseptica RB50: BB3231
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Entry
BB3231 CDS
T00141
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bbr
Bordetella bronchiseptica RB50
Pathway
bbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB3231 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbr03021
]
BB3231 (rho)
03019 Messenger RNA biogenesis [BR:
bbr03019
]
BB3231 (rho)
Transcription machinery [BR:
bbr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BB3231 (rho)
Messenger RNA biogenesis [BR:
bbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BB3231 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
ResIII
Phostensin_N
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
CAE33723
UniProt:
A0A0H3LP75
LinkDB
All DBs
Position
3451586..3452842
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AA seq
418 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPDTSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GSPPEAIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGRILDIFAPIGKGQRGLIVAPP
KSGKTVMMQHVAHAITTNYPDAVLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPELLQKVWVLRKFIHDMDEIQSMEFILDKMRATKTNAEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaatgaactgaaggcgctgcacgtgtcgcagttgctggaaatggccgccggc
ctggaaatcgagaacgccaaccgcctgcgcaagcaggagttgatgttcgccatcatgaag
cggcgcgccaagcaaggcgaacagatcttcggcgacggcgtgctggaagtcctgcccgac
ggcttcggattcctgcgctcgccggacacctcgtacctggccagcaccgacgacatctac
atctcgccgtcgcagatccgccgcttcaacctgcacaccggcgactccatcgagggcgaa
gtacgcaccccgaaggatggcgagcgctatttcgcgctggtcaaggtggacaaggtcaac
ggctcgccccctgaagcgatcaagcatcgcatcatgttcgagaacctgacgccgctgcac
cccaaccaggtgatgcgtctggaacgcgacatcaagagcgaggaaaacctcaccggccgc
atcctcgacatcttcgcccccatcggcaagggccagcgcggcctgatcgtggcgccgccc
aagtccggcaagacggtgatgatgcagcatgtggcccacgccatcaccaccaattatccg
gatgcggtgctcatcgtcctgctggtcgacgaacgccccgaggaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtggcctcgaccttcgacgaaccggccacccgtcacgtg
caggtcgccgaaatggtcatcgagaaggccaagcgcctggtcgagatgaaaaaggacgtg
gtcatcctgctggactcgatcacccgcctggcccgcgcctacaacaccgtggtgccggcc
tccggcaaggtgctgaccggcggcgtggacgccaacgccctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaacctcgaggaaggcggctcgctgaccatcctgggtaccgccctg
atcgaaacgggcagccggatggacgaagtcatctacgaagaattcaagggcaccggcaac
tccgaagtgcacctggagcgccgcctggccgaaaagcgcgtctacccgtccatcaacctg
aacaagtcgggcacccgccgcgaagagctgctgatcaagcccgaactgctgcagaaggta
tgggtgctgcgcaagttcatccacgacatggacgaaatccagtcgatggaattcatcctc
gacaagatgcgcgccaccaagaccaacgccgaattcttcgacatgatgaagaaataa
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