Bordetella bronchiseptica RB50: BB3239
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Entry
BB3239 CDS
T00141
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
bbr
Bordetella bronchiseptica RB50
Pathway
bbr03030
DNA replication
bbr03410
Base excision repair
bbr03420
Nucleotide excision repair
bbr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB3239 (polA)
03410 Base excision repair
BB3239 (polA)
03420 Nucleotide excision repair
BB3239 (polA)
03440 Homologous recombination
BB3239 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbr03032
]
BB3239 (polA)
03400 DNA repair and recombination proteins [BR:
bbr03400
]
BB3239 (polA)
Enzymes [BR:
bbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BB3239 (polA)
DNA replication proteins [BR:
bbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BB3239 (polA)
DNA repair and recombination proteins [BR:
bbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BB3239 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BB3239 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WD40_4
Motif
Other DBs
NCBI-ProteinID:
CAE33731
UniProt:
A0A0H3LQM6
LinkDB
All DBs
Position
complement(3465318..3468032)
Genome browser
AA seq
904 aa
AA seq
DB search
MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA
RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQ
ASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNNKFGVPPERIVDYLMLVG
DTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLLT
VKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLRELTGDQERLPTGDARAVPQ
AVAPAELDYRIITDWAAFDAWMALVEDAPLVALDTETTSLDEMQARLVGLSMAVKPGVAC
YIPVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANEGVSLAGVAED
TMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVALAGHYSCEDS
DFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEM
LALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPL
PQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRT
EAGRRVREAFIAEQGKLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGV
PLAEVGAEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDD
TRRLARDQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQ
DWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVATLRVPLVAEVGMGTNW
EQAH
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaccttattgctggtagacggttcgagctacttgtaccgtgctttccacgcc
atgcccgacctgcgcaatgcgcagggcgaacccacgggtgcgctttatggcgtggtcaat
atgttgcgcaagctcgttcaggatcataaggcagagtatgccgtatgcgttttcgatgca
cgcggaaaaacattccgggacgatttgttccctgactacaagtcgcaccgcccgcccatg
cccgaagacctggcggcgcagatcgagccgatccacgaggccgtacgcgccctgggctgg
ccgctgctggccatcgaaggggtggaggcggacgacatcatcggcacgctggcgcggcag
gccagcgcgcaaggcatcgacaccatcgtctccacgggcgacaaggacctggcgcaactg
gtcgacccgcacgtcacgctggtcaacaccatgagcggcgaggtgctcgacgttgccggg
gtgaacaacaagttcggcgtgccgccggagcgcatcgtcgattacctgatgctggtcggc
gacacggtcgacaatgtgcccggcgtgaacaaggtcggacccaagacggccgtcaagtgg
ctggccgaacatggctccatcgacgcgctggtggccgccgccgacagcgtcaagggcgtg
gccggcaacaatctgcgcgaagccattccgaactttccgctcacgcgcacgctgctgacg
gtcaagtgcgactgcgacctgaccggccatgtgtcggattgggaagacctggcatggcgc
gagcgcgacgcggccacattgaccgcgctgttcgaccgctacggttttcgcacctggctg
cgcgaactgacgggcgaccaggagcgcctgcccacgggggacgcgcgcgccgtgccgcag
gccgtcgcgccggccgagctggactaccgcatcatcaccgactgggccgccttcgatgcc
tggatggcgctggtggaggacgcgccgctggtggcgctggatacggaaaccacgtcgctc
gacgagatgcaggcgcggctggtgggcctgtcgatggcggtcaagccgggcgtggcctgc
tacatcccggtggcgcaccgtggccccgaggcgggcgatcaattgcccagggacgaggtc
atcgcgcgcctgcgcggctggctggaggacgccgggcgcgccaagctgctgcaccatgcc
aaatacgatacccatgtcttcgccaacgaaggagtgagcctggcgggcgtggccgaggac
acgatgctgcaggcctatgtgctggagtcgcatcgcggcgtgggcctgaacgacctggcc
cagcggtttctcgggcgcagcggcgtgaactacgaagacctgtgcggcaagggcgccaag
cagatcggtttcgacgaggtggcggtcgccctggcggggcattattcctgcgaggattcc
gatttcacgctgcagttgcacgaggtgctgcgcccgcgcgtggccgaggacgaagggctg
gagcgcacctacctgctggagctgcaggtctcgcgcgtgctgaccgtggtcgagcgcaac
ggcgtgaaggtcgatgcccaggagctggggcgccagagccacaagctgggccaggaaatg
ctggcgctggagcagcgcgcctacgagctggccggccagccgttcaacctgaactctccc
aagcaattgggcgagatcctgttcggccgcatggggctgccggtcgtgcgcaagaccgcg
ggcggcgccccctcgaccgacgaggaagtgctgtccaagctggcgcaggactacccgctg
ccgcaggtgctgctggaataccggggcctgtccaagctgaagtccacctacaccgacaag
ctgccacgcatgatcaacccggccaccggccgcgtgcatacgcactattcgcaggcggcg
gtgatcaccggccggctggcgtcgtcggatcccaacctgcagaacatcccggtgcgcacc
gaggccggccggcgcgtgcgcgaggccttcatcgccgagcagggcaagctgctgtcggcc
gactactcgcagatcgaactgcgcatcatggcgcacgtttcggatgacgccaacctgcag
cgtgccttcgcggcgggcgaggatatccaccgcgcgaccgcctccgaggtgttcggcgtg
ccgctggccgaggtcggcgccgagcagcgccgcgccgcgaaggcgatcaatttcggactg
atctacggcatgggcgtgttcgggctggcttccaacctgggcattacgcgcgatgccgcg
caagcctacatcgaccgctatttcacccgctatcccggcgtggcgcgctacatggacgac
acgcgccggctggcgcgcgaccagggctacgtcgagacggtattcggccgcaggctgcag
ctgccggacatccgcgccgcctccgggccgcgccgccagggcgccgagcgggccgccatc
aatgcgccgatgcagggtaccgccgccgacctgatcaagatggccatggtggcggtgcag
gactggctggacgccgagcgcctgcgcacccgcatgatcatgcaggtgcacgacgaactg
gtgctggaggtgcccgacgaggaactggcggcggtcgccgaagcgctgccgcggctgatg
tgcgacgtggccacgctgcgcgtgccgctggtggccgaggtgggcatgggcacgaactgg
gaacaggcgcactga
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